Locus 3781

Sequence ID X_DroMel_CAF1
Location 10,015,651 – 10,015,769
Length 118
Max. P 0.500000
window6209

overview

Window 9

Location 10,015,651 – 10,015,769
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.94
Mean single sequence MFE -34.50
Consensus MFE -26.59
Energy contribution -27.90
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -1.38
Structure conservation index 0.77
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10015651 118 + 22224390
UUGGGUGCUGUAAUUGAGGCAACUUUGCA--GAAAGGCAAAACUUGCCGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGCGCGCCGGCAUGCAUAUUUAUGCCUCAAAAACUCAACUU
((((((.......((((((((........--....((((.....))))((((((.((....((((((........).))))).))...)))))).......))))))))..))))))... ( -35.20)
>DroAna_CAF1 16036 111 + 1
UCGGGGGCUGUAAUUGAGGAAAGUUUGGAAGGAAAGGCACAAGUUGCCGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGAGCGCCGGCAUGCAUAUUUAUGCCCCACG---------C
.(((((((.((((.((...................((((.....))))((((((.((....((((.((((.....).)))))))..)))))))).)).))))))))).))---------. ( -31.50)
>DroEre_CAF1 23088 118 + 1
UUGGGUGCUGUAAUUGAGGCAACUUUGCA--GGAAGGCAAAAGUUGCUGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGCGCGCCGGCUUGCAUAUUUAUGCCUCAAAAACUCAACUU
((((((..((((..((.(((((((((((.--.....)).))))))))).))..)))).....((((..((((((((.(((((......))))))))...)))))..)))).))))))... ( -35.20)
>DroYak_CAF1 19217 118 + 1
UUGGGUGCUGUAAUUGAGGCAAGUUUGCA--GAAAGGCAAAAGUUGCCGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGCGCGCCGGCAUGCAUAUUUAUGCCUCAAAAACUCAACUU
((((((((((((..((.(((((.(((((.--.....)))))..))))).))..))))....((((((........).))))))))))((((((......)))))).)))........... ( -36.10)
>consensus
UUGGGUGCUGUAAUUGAGGCAACUUUGCA__GAAAGGCAAAAGUUGCCGCAUGUACGAAUAGUUUGCUGCAUAAUGACAGGCGCGCCGGCAUGCAUAUUUAUGCCUCAAAAACUCAACUU
...(((((((((..((.(((((.(((((........)))))..))))).))..))))....((((((........).))))))))))((((((......))))))............... (-26.59 = -27.90 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:17 2006