| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,130,198 – 1,130,303 |
| Length | 105 |
| Max. P | 0.635106 |
| Location | 1,130,198 – 1,130,303 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 93.39 |
| Mean single sequence MFE | -38.28 |
| Consensus MFE | -32.54 |
| Energy contribution | -33.22 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1130198 105 - 22224390 UAUCGCCAGCAAAUUUAUGCCAUAGAAUUGCGGAAUAUGCCACACCCCAGUCUGGGGCAACCCCCUCGUUGGAUAUGGGGGGUUGUG---CCAAAGGACUGCCCCAUG--- .....((.((((.(((((...))))).))))))..............((((((((.(((((((((.(((.....)))))))))))).---))...)))))).......--- ( -36.60) >DroSec_CAF1 26827 105 - 1 UAUCGCCAGCGAAUUUAUGCCAUAGAAUUGCGGAAUAUUCCACACCCCAGUGUGGGGCAACCCCCUCGUUGGCUGUGGGGGGUUGUG---CCAAAGGACUGCCCCAUG--- ....((((((((.....((((...(.....)........((((((....))))))))))......)))))))).((((((((((.(.---....).)))).)))))).--- ( -39.20) >DroSim_CAF1 28273 105 - 1 UAUCGCCAGCGAAUUUAUGCCAUAGAAUUGCGGAAUAUGCCACACCCCAGUCUGGGGCAACCCCCUCGUUGGCUGUGGGGGGUUGUG---CCAAAGGACUGCCCCAUG--- ....((((((((.....((((.((((.(((.((............))))))))).))))......)))))))).((((((((((.(.---....).)))).)))))).--- ( -38.10) >DroEre_CAF1 28112 105 - 1 UAUCGCCAGCGAAUUUAUGCCAUAGAAUUGCGGAAUAUGCCACACCCCAGUCUGGGGCAACCCCCUCGUUGGCAGUGGGGGGUUGGG---CGAAAGGACUGCCCCAUG--- ....((((((((.....((((.((((.(((.((............))))))))).))))......)))))))).....(((((.(..---(....)..).)))))...--- ( -38.80) >DroYak_CAF1 27716 110 - 1 UAUCGCCAGCGAAUUUAUGCCAUAGAAUUGCGGAAUAUGCCACACCCCAGUCUGGGGCAACC-CCUCGUUGGCUGCGGGGGGUUGUGCUGCUAAAGGACUGCUCCAUGUAC ....((((((((.....((((.((((.(((.((............))))))))).))))...-..))))))))((((.(((((.((.((.....)).)).))))).)))). ( -38.70) >consensus UAUCGCCAGCGAAUUUAUGCCAUAGAAUUGCGGAAUAUGCCACACCCCAGUCUGGGGCAACCCCCUCGUUGGCUGUGGGGGGUUGUG___CCAAAGGACUGCCCCAUG___ ....((((((((.....((((.((((.(((.((............))))))))).))))......)))))))).((((((((((.(........).)))).)))))).... (-32.54 = -33.22 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:05 2006