Locus 3779

Sequence ID X_DroMel_CAF1
Location 10,010,455 – 10,010,563
Length 108
Max. P 0.500000
window6207

overview

Window 7

Location 10,010,455 – 10,010,563
Length 108
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 85.05
Mean single sequence MFE -31.33
Consensus MFE -25.66
Energy contribution -26.94
Covariance contribution 1.28
Combinations/Pair 1.04
Mean z-score -1.52
Structure conservation index 0.82
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10010455 108 + 22224390
CACGGCGACAGGUGAGAGAUGUUGCCGCUGGCACACACACACACACACUCUUGCAGUUGGGGCACAGGUGCCAAAACGGUGGGCCAUCAAAGAG-CGACAAAAAAAAAC
((((((((((..(....).)))))))).))...............(.(((((...(((..((((....))))..)))((....))....)))))-.)............ ( -30.70)
>DroSec_CAF1 15876 101 + 1
CACGGCGACAGGCGAGAGAUGUUGCCGCUGGCACACACA--CACACACUCUUACUGUUGGGGCACAGGUGCCAAAACGGUGGGCCAUCAAAGAG------AAAAAAAAC
((((((((((..(....).)))))))).)).........--........(((((((((..((((....))))..)))))))))...........------......... ( -32.90)
>DroEre_CAF1 16484 101 + 1
CACGGCGACAGGCGAGAGAUGUUGCCGCUGGCACAAACACACACAUGCAGUUGCAGUUGGGGCACAGGUGGCAAAACGGUGGGCCAUCAAAGGAA--------AAAUAA
..((((((((..(....).)))))))).((((.....(((.....(((....)))(((..(.((....)).)..))).))).)))).........--------...... ( -30.40)
>consensus
CACGGCGACAGGCGAGAGAUGUUGCCGCUGGCACACACACACACACACUCUUGCAGUUGGGGCACAGGUGCCAAAACGGUGGGCCAUCAAAGAG______AAAAAAAAC
..((((((((..(....).)))))))).((((...(((.................(((..((((....))))..))).))).))))....................... (-25.66 = -26.94 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:15 2006