Locus 3777

Sequence ID	X_DroMel_CAF1
Location	10,008,626 – 10,008,733
Length	107
Max. P	0.500000

overview

Window 4

Location	10,008,626 – 10,008,733
Length	107
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	84.36
Mean single sequence MFE	-30.53
Consensus MFE	-17.62
Energy contribution	-18.31
Covariance contribution	0.69
Combinations/Pair	1.12
Mean z-score	-2.05
Structure conservation index	0.58
SVM decision value	-0.08
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10008626 107 - 22224390
UGUUUUACAGCU--UAUCA----AGUAUUAUGCACAGUGCAUUGCUGGCAUAUA-GG-CUGAAAUGCACUGCUGGCUAAUUAAGCUGAGUGAGUAAGGACAAUUUCGGAUGACAA
((((((...(((--(((..----(((((((.((.(((((((((..((((.....-.)-))).)))))))))...))))))...)))..)))))).)))))).............. ( -28.80)
>DroSec_CAF1 14099 106 - 1
-GUUUUAAGGCU--UAUCA----AGUAUUAUUCACAGUGCAUUGCUGGCAUAUA-GG-CUGAAAUGCACUGCUGGCUAAUUAAGCUGAGUGAGUAAGGACAAUUUCGGAUGACAA
-(((((...(((--(((..----(((((((..(((((((((((..((((.....-.)-))).))))))))).))..))))...)))..)))))).)))))............... ( -29.50)
>DroEre_CAF1 14643 112 - 1
-GUUUUACAGCU--UAUCACCCCACAAUUCUUCGCAGUGCAUUGCUGUCAUAUGAGACCUGGCAUGCACUGCUGGGUAAUUAAGCUGAGUGAGUAUGGACAAUUUCGGAUGACAA
-......(((((--((....((((.........(((((((((.((((((......)))..))))))))))))))))....))))))).((.(...((((....))))..).)).. ( -36.10)
>DroYak_CAF1 11421 109 - 1
-UUUUAACAGCAAGUAUUA----AGUAUUAUUCACAGUGCAUUGCUGUCAUAUG-GCCCUCAAAUGCACUGCCGGCUAAUUAAGCCAAGUGAGUAAGGACCAUUUUGGAUGACAA
-......((.((((.....----.((.((((((((((((((((...(((....)-)).....))))))))...((((.....))))..))))))))..))...))))..)).... ( -27.70)
>consensus
_GUUUUACAGCU__UAUCA____AGUAUUAUUCACAGUGCAUUGCUGGCAUAUA_GG_CUGAAAUGCACUGCUGGCUAAUUAAGCUGAGUGAGUAAGGACAAUUUCGGAUGACAA
..............((((.........((((((((((((((((...................))))))))...((((.....))))..))))))))...........)))).... (-17.62 = -18.31 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:12 2006