| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,006,559 – 10,006,658 |
| Length | 99 |
| Max. P | 0.609715 |
| Location | 10,006,559 – 10,006,658 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 84.93 |
| Mean single sequence MFE | -24.11 |
| Consensus MFE | -19.00 |
| Energy contribution | -19.33 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10006559 99 - 22224390 UUUUUGCCCUUUU-----------------UUUUGUUUUUGCUGUCAACGCUGCCUG--UCGCGGUUGUAAAAUCAGCGAAAUGUUAGCACUCAGCCAAAAAUAAACAAAAGCAUAUU ........(((((-----------------.(((((((((((((.....((((.(..--((((((((....)))).))))...).))))...))).)))))))))).)))))...... ( -25.50) >DroEre_CAF1 12615 116 - 1 UUUUGGCCCUUUUCGUUUUUUUUUCUGUCUUUUUGUUUUUCCUGUCGACGCUGCCUG--UCGCGGUUGUAAAAUCAGCGAAAUGUUAGCAUUCAGCCAAAAAUAAACAAAAGCAUUUU (((((((...................(((.................)))((((.(..--((((((((....)))).))))...).)))).....)))))))................. ( -21.43) >DroYak_CAF1 9339 110 - 1 UUUUUGCCCUUUUUGUUUUUUUC--------UUUGUUUUUGCUGUCAACGCUGCCUGUGUCGCGGUUGUAAAAUCAGCGAAAUGUUAGCACUCAGCCAAAAAUAAACAAAAGCAUAUU .............(((((((...--------(((((((((((((.....((((.(....((((((((....)))).))))...).))))...))).)))))))))).))))))).... ( -25.40) >consensus UUUUUGCCCUUUU_GUUUUUUU________UUUUGUUUUUGCUGUCAACGCUGCCUG__UCGCGGUUGUAAAAUCAGCGAAAUGUUAGCACUCAGCCAAAAAUAAACAAAAGCAUAUU ...............................(((((((((((((.....((((.(....((((((((....)))).))))...).))))...))).))))))))))............ (-19.00 = -19.33 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:08 2006