Locus 3774

Sequence ID X_DroMel_CAF1
Location 10,005,990 – 10,006,098
Length 108
Max. P 0.631651
window6200

overview

Window 0

Location 10,005,990 – 10,006,098
Length 108
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 88.94
Mean single sequence MFE -29.25
Consensus MFE -19.79
Energy contribution -20.60
Covariance contribution 0.81
Combinations/Pair 1.14
Mean z-score -2.06
Structure conservation index 0.68
SVM decision value 0.20
SVM RNA-class probability 0.631651
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10005990 108 + 22224390
CGAAUGUGUCUCUUUUUGAGUGGCAAGGGGGCAUAUACCAUAACUUGUUGCACCAACGAUAUUUUGCCACUUUAUCAUUCAGAUGAGAUGCGUUUACACUUUAAAUAG
.(((((((((((..((((((((..((((.((((.(((.......((((((...)))))))))..)))).))))..)))))))).)))))))))))............. ( -33.41)
>DroSec_CAF1 11517 106 + 1
CGAAUGUGUCUCUUUUCUGGUGGCAAGGGGGCAU--CCCAUAACUUGUUGCACCAACGAUAUUUAGCCACUUUAUCAUCCCGAUGAGAUGCGUUUACACUUUAAAUAG
.(((((((((((......((((((..(((.....--))).....((((((...))))))......))))))..(((.....))))))))))))))............. ( -29.10)
>DroEre_CAF1 12083 103 + 1
CGAAUGUGUCACCUUUCGGU-GGCAAGG--GACU--GCCAUAACUUGUUGCACCAUCGAUGUUUAGCCACUUUAUCAUACCGAUGAGAUGCGUUUACACUUUAAAUAG
(((..((((.((......((-((((...--...)--))))).....)).))))..))).(((..(((((.((((((.....)))))).)).))).))).......... ( -22.40)
>DroYak_CAF1 8715 106 + 1
UGAAUGUGUCUCUUUUCGGUUGGCAAGGUGGCAU--CCCAUAACUUGUUGCACCGUCGAUAUUUAGCCACUUUAUCAUCCCGAUGAGAUGCGUUUACACUUUAAAUAG
((((((((((((...((((.((..((((((((..--....(((..(((((......))))).)))))))))))..))..)))).))))))))))))............ ( -32.10)
>consensus
CGAAUGUGUCUCUUUUCGGGUGGCAAGGGGGCAU__CCCAUAACUUGUUGCACCAACGAUAUUUAGCCACUUUAUCAUCCCGAUGAGAUGCGUUUACACUUUAAAUAG
.(((((((((((...(((((.((((((..((......))....))))))........((((...........))))..))))).)))))))))))............. (-19.79 = -20.60 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:06 2006