Locus 3772

Sequence ID X_DroMel_CAF1
Location 10,002,364 – 10,002,480
Length 116
Max. P 0.895645
window6193

overview

Window 3

Location 10,002,364 – 10,002,480
Length 116
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 82.76
Mean single sequence MFE -26.83
Consensus MFE -18.48
Energy contribution -19.27
Covariance contribution 0.79
Combinations/Pair 1.15
Mean z-score -2.41
Structure conservation index 0.69
SVM decision value 0.99
SVM RNA-class probability 0.895645
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10002364 116 + 22224390
UACCUUUACAUAUUCCAUGCCAUUUUGCAGUAAUACCGCCUUC--UCUGGCAUUGCAGGAAAAUGCUGCAUUUUUUUUUUAACCUCCAAUAUGCUGGGAUAUUUACGAAUAUUUCGUG
.........((((((((.((.((.(((.((.......(((...--...)))..(((((.......))))).............)).))).)))))))))))).(((((.....))))) ( -24.70)
>DroSec_CAF1 7932 105 + 1
UACCUUUGCAUAUUCCAUGCUAUUUUGCAGUAAUGCCGCCUUC--UCUGGCAUUGCAG-------UUGCAUUU----UUUAAGCUCCAAUAUGCUGGGAUAUUCACGAAUAUUUCGUG
..(((..(((((((....(((....(((((((((((((.....--..)))))))))..-------.))))...----....)))...))))))).))).....(((((.....))))) ( -30.70)
>DroEre_CAF1 8430 113 + 1
UACCUUUGCGUACUCCCUGUUAUUUUGCAGUGAUGCCGCCUUCUCUCUGGCAUUU-AAAAAAGUGCAGCAUUU----UUUAAGCUUCAAUAUGCUGGGAUAUUUACGAAUAUUUCGUG
..(((..(((((....((((......))))(((.((.(((........)))..((-((((((........)))----))))))).))).))))).))).....(((((.....))))) ( -25.10)
>consensus
UACCUUUGCAUAUUCCAUGCUAUUUUGCAGUAAUGCCGCCUUC__UCUGGCAUUGCAG_AAA_UGCUGCAUUU____UUUAAGCUCCAAUAUGCUGGGAUAUUUACGAAUAUUUCGUG
..(((..(((((((...(((......)))(((((((((.........)))))))))...............................))))))).))).....(((((.....))))) (-18.48 = -19.27 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:59 2006