Locus 3771

Sequence ID X_DroMel_CAF1
Location 9,997,887 – 9,997,992
Length 105
Max. P 0.526889
window6192

overview

Window 2

Location 9,997,887 – 9,997,992
Length 105
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 89.74
Mean single sequence MFE -22.98
Consensus MFE -14.95
Energy contribution -15.20
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.65
SVM decision value -0.01
SVM RNA-class probability 0.526889
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9997887 105 + 22224390
CAAAAAAACC-CGAUUCCCAUUUGAAUGGCAGAUGGCGGAACAACAACAGCAGGAGUAAGCAAAUCAAAGGUUGGCACACCCUGGAAUUCAUAAAUAAAAUUUAAG
.........(-((....(((((((.....))))))))))...........((((.((..((.(((.....))).))..))))))...................... ( -19.10)
>DroSec_CAF1 4032 102 + 1
CAAAAAAAAC-CGUUUCCCAUUUGAAUGGCAGAUGGCGGAACAACAAC---AGGAGUAAGCAAAUCAAAGGUUGGCACACCCUGGAAUUCAUAAAUAAAAUUUAAG
..........-.((((((((((((.....))))))).))))).....(---(((.((..((.(((.....))).))..))))))...................... ( -23.30)
>DroSim_CAF1 211 103 + 1
CAAAAAAAACCCGUUUCCCAUUUGAAUGGCAGAUGGCGGAACAACAAC---AGGAGUAAGCAAAUCAAAGGUUGGCACACCCUGGAAUUCAUAAAUAAAAUUUAAG
............((((((((((((.....))))))).))))).....(---(((.((..((.(((.....))).))..))))))...................... ( -23.30)
>DroEre_CAF1 4171 97 + 1
CAAA-AAACC-CGUUUCCCAUUUGAAUGGCAGAUGGCGGAACAA---C---AGGAGUAAGCCAAUCAAAGGUUGGCCC-ACACGGAGUUCAUAAACAAAUUUAAAA
....-.((((-(((((((((((((.....))))))).)))))..---.---....((..((((((.....))))))..-))..)).)))................. ( -26.20)
>consensus
CAAAAAAAAC_CGUUUCCCAUUUGAAUGGCAGAUGGCGGAACAACAAC___AGGAGUAAGCAAAUCAAAGGUUGGCACACCCUGGAAUUCAUAAAUAAAAUUUAAG
............((((((((((((.....))))))).))))).................((.(((.....))).)).............................. (-14.95 = -15.20 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:58 2006