Locus 3770

Sequence ID X_DroMel_CAF1
Location 9,994,206 – 9,994,297
Length 91
Max. P 0.881848
window6191

overview

Window 1

Location 9,994,206 – 9,994,297
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 71.40
Mean single sequence MFE -21.95
Consensus MFE -17.46
Energy contribution -16.15
Covariance contribution -1.31
Combinations/Pair 1.35
Mean z-score -1.21
Structure conservation index 0.80
SVM decision value 0.92
SVM RNA-class probability 0.881848
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9994206 91 - 22224390
GUGUGUUAACUUGGAAAAGUCGAGAAUCAGGAGUUCGCUGAAACGCUAAUGUUGUUUUUGUUGACUCUGCUCUCGAAUUCCGACCCCUCGU
..........((((((...((((((....((((((.((.(((((((....).)))))).)).))))))..)))))).))))))........ ( -26.40)
>DroPse_CAF1 10378 75 - 1
CUCUGUUUGCUUUACGGAGUCGAGAGUCGAAACUUCACCGGAGCGCUAAUGUUGUUUUUGUUGAUUUUGCUCUUG----------------
((((((.......)))))).((((((.(((((.((.((..((((((....).)))))..)).)))))))))))))---------------- ( -18.90)
>DroYak_CAF1 7221 90 - 1
GUGUGUCGACUUGGAAAAGUCGAGAAUCAGGAGUUCGCUGAAACGCUAAUGUUGUUUUUGUUGAUUCUGCUCUCGAAU-CCAACCCCUCGU
......(((.(((((....((((((....((((((.((.(((((((....).)))))).)).))))))..)))))).)-))))....))). ( -23.60)
>DroPer_CAF1 10889 75 - 1
CUCUGUUUGCUUUACGGAGUCGAGAGUCGAAACUUCACCGGAGCGCUAAUGUUGUUUUUGUUGAUUUUGCUCUUG----------------
((((((.......)))))).((((((.(((((.((.((..((((((....).)))))..)).)))))))))))))---------------- ( -18.90)
>consensus
CUCUGUUUACUUGAAAAAGUCGAGAAUCAAAACUUCACCGAAACGCUAAUGUUGUUUUUGUUGAUUCUGCUCUCG________________
........((((....))))(((((((..((((((.((.(((((((....).)))))).)).)))))))))))))................ (-17.46 = -16.15 +  -1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:57 2006