Locus 377

Sequence ID X_DroMel_CAF1
Location 1,130,065 – 1,130,165
Length 100
Max. P 0.658228
window575

overview

Window 5

Location 1,130,065 – 1,130,165
Length 100
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 87.97
Mean single sequence MFE -26.76
Consensus MFE -21.24
Energy contribution -21.28
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.79
SVM decision value 0.26
SVM RNA-class probability 0.658228
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1130065 100 + 22224390
UCUACUGCGUCUUCGACUGUCGGCUGU---UGUAGCGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGCUCCGUGGCUCUGUGACUCU
........(((...))).((((((..(---.(.(((((..(((((..(((((((..........)))))))...))))).)))))).)..)))....)))... ( -28.10)
>DroSec_CAF1 26702 92 + 1
UCUACUGCGUCUUCGACUGUCGGCUGU---UGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGGGCCGUGGCUC--------U
....(..((.((.(((.((((((..((---(((((....))).))))(((((((..........)))))))..)))))).))))).))..)...--------. ( -28.60)
>DroSim_CAF1 28148 92 + 1
UCUACUGCGUCUUCGACUGUCGGCUGU---UGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGUUCCGUGGCUC--------U
....(..((....(((.((((((..((---(((((....))).))))(((((((..........)))))))..)))))).)))...))..)...--------. ( -27.20)
>DroEre_CAF1 27995 84 + 1
UCUACUGCGUCUUCGACUGCCGGCUGU---UGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGUU--------C--------U
.............(((.((((((..((---(((((....))).))))(((((((..........)))))))..)))))).)))..--------.--------. ( -24.90)
>DroYak_CAF1 27571 87 + 1
UCUACUGCGUCUCCGACUGUCGGCUGUUGUUGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGUU--------C--------U
.((((.(((.(.(((.....)))..).))).)))).(((((((((..(((((((..........)))))))...)))))...)))--------)--------. ( -25.00)
>consensus
UCUACUGCGUCUUCGACUGUCGGCUGU___UGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGUUCCGUGGCUC________U
.............(((.((((((.((.....(..(((((.((((.......))))...)))))..).....)))))))).))).................... (-21.24 = -21.28 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:04 2006