| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,977,143 – 9,977,261 |
| Length | 118 |
| Max. P | 0.853624 |
| Location | 9,977,143 – 9,977,261 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.70 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -12.90 |
| Energy contribution | -12.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9977143 118 + 22224390 AACGAGGACAUCGAGGACAGGCGAGAAAUUGUGGCCAUAAUGAAAAUGGCUAGGAAAAUUAGUCAAAUAUAAUGGCAGUUGUUUGUUUGUUUGUUCUUUAAAGGUUAAUUGCCAGAUU ..(((.....)))((((((((((((((((....(((((.(((....(((((((.....)))))))..))).)))))....)))).)))))))))))).....(((.....)))..... ( -31.70) >DroSec_CAF1 22508 97 + 1 -------------AGGACAGGCGAGAAAUUGUGACCAUAAUGAAAAUGGUUAGGCAAAUUAGUCAAAUAUAAUGGCAGUUGUU--------UGUUCUUUAAAGGUUAAUGGCCAGAUU -------------(((((((((((....((((((((((.......))))))..))))....((((.......))))..)))))--------)))))).....(((.....)))..... ( -23.00) >DroEre_CAF1 9787 102 + 1 AGUUC---GAUCAAC-----GCCAUUAAGGAACGCCAUAAUGAAAAUGGUCAAGAGAAUUAGUCAAAUAUAAUGACAGUUGCU--------UGUUCUUUAAAGGUUAAUUGCCAGAUU ...((---...(((.-----(((.((((((((((((((.......)))))...(((((((.((((.......)))))))).))--------)))))))))).)))...)))...)).. ( -22.10) >DroYak_CAF1 10076 107 + 1 AACUC---AAUCGAAUACAGGCGAAAAAUUGUGGCCAUUACGCAAAUGGUCAUGAAAAUUAGUCAAAUAUAAUGACAGUUGUU--------UGUUCUUUAAAGGUUAAUUGCCAGAUU .....---((((((..((((((((....(..((((((((.....))))))))..)......((((.......))))..)))))--------)))))......(((.....))).)))) ( -25.50) >consensus AACUC____AUCGAGGACAGGCGAGAAAUUGUGGCCAUAAUGAAAAUGGUCAGGAAAAUUAGUCAAAUAUAAUGACAGUUGUU________UGUUCUUUAAAGGUUAAUUGCCAGAUU ...................(((.........(((((((.......))))))).........((((.......))))..................................)))..... (-12.90 = -12.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:56 2006