Locus 3767

Sequence ID X_DroMel_CAF1
Location 9,976,866 – 9,976,956
Length 90
Max. P 0.554655
window6188

overview

Window 8

Location 9,976,866 – 9,976,956
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 83.54
Mean single sequence MFE -25.80
Consensus MFE -16.05
Energy contribution -17.47
Covariance contribution 1.42
Combinations/Pair 1.17
Mean z-score -2.40
Structure conservation index 0.62
SVM decision value 0.04
SVM RNA-class probability 0.554655
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9976866 90 + 22224390
AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU----AUGUACCAAAAAUGGCCAA
.(((((((.((((((((((.((((......)))).)))))))))))))))))((((.....(((((((...----....)))))))..)))).. ( -33.80)
>DroPse_CAF1 34222 87 + 1
---GAUUUCUCCUUUUGC-U-CGGAAAAAUUUGCUGG--AAAGGACAAACUUGGCUUUGACUUUCGGUUUUCGUGACUUACCAAAAAUGGGCAA
---(((((.(((......-.-.))).)))))((((.(--((((..((((......)))).)))))(((...........))).......)))). ( -15.10)
>DroSec_CAF1 22226 90 + 1
AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU----AUGUACCAAAAAUGGCCAA
.(((((((.((((((((((.((((......)))).)))))))))))))))))((((.....(((((((...----....)))))))..)))).. ( -33.80)
>DroEre_CAF1 9513 90 + 1
AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU----AUGUACGAAAAAUGGCCAA
.(((((((.((((((((((.((((......)))).)))))))))))))))))((((.....((((.((...----....)).))))..)))).. ( -29.40)
>DroYak_CAF1 9786 90 + 1
AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU----AUGUACGAGAAAUGGGCAA
.(((((((.((((((((((.((((......)))).))))))))))))))))).((((....((((.((...----....)).))))..)))).. ( -27.40)
>DroPer_CAF1 34975 87 + 1
---GAUUUCUCCUUUUGC-U-CGGAAAAAUUUGCUAG--AAAGGACAAACUUGGCUUUGACUUUCGGUUUUCGUGACUUACCAAAAAUGGGCAA
---(((((.(((......-.-.))).)))))((((.(--((((..((((......)))).)))))(((...........))).......)))). ( -15.30)
>consensus
AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU____AUGUACCAAAAAUGGCCAA
...(((((.((((((((((.((((......)))).))))))))))))))).((.((.....(((((((...........)))))))..)).)). (-16.05 = -17.47 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:55 2006