Locus 3765

Sequence ID X_DroMel_CAF1
Location 9,974,806 – 9,974,913
Length 107
Max. P 0.736312
window6185

overview

Window 5

Location 9,974,806 – 9,974,913
Length 107
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 76.76
Mean single sequence MFE -19.27
Consensus MFE -2.52
Energy contribution -3.81
Covariance contribution 1.29
Combinations/Pair 1.07
Mean z-score -1.67
Structure conservation index 0.13
SVM decision value 0.44
SVM RNA-class probability 0.736312
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9974806 107 - 22224390
UACAACCGCAAAAACCGAAACUAAA-CAGCAGUGCAACAAUUUCAGCGGACCAAAU-UCUGCACUCCAAAAUGGACAUGAAAUUAGUUUUCUAUUUUC-GGCCAAAAA---GU
.....(((.((((...((((((((.-..((...)).....((((((((((......-)))))..(((.....)))..)))))))))))))...)))))-)).......---.. ( -20.40)
>DroSec_CAF1 20122 107 - 1
UACAACCGCAAAUACCGAAACUAAACCAGCAGUGCAACAAUUUCAGCGAACCAAAU-UCUGCACUCCAAAAUGGACACGAAAUUAGUU-UCUAUUUCU-GGCCAAAAA---GU
.....(((.(((((..((((((((.......(((((..(((((.........))))-).)))))(((.....))).......))))))-))))))).)-)).......---.. ( -18.50)
>DroEre_CAF1 7468 107 - 1
UACAACCGCAAAAACCGAAACUAAA-CAGCAGUGCAACAAUUUGUACGAGCAAAAUUUCUGCAUUCCAAAAUGGACGUGAAAUUAGUU-UCUAAUUUU-GGCCAAAAA---GU
........(((((...((((((((.-..((.((((((....))))))..))....((((.((..(((.....))).))))))))))))-))...))))-)........---.. ( -21.50)
>DroYak_CAF1 7730 93 - 1
UACAACCGCAAAACCCGAAACUAAA-CAGCAGAGCAAAAAAUUUC---AAUGAAAUUUCA--AU---------UACAUGAAAUUAGUU-UCCAUUUCU-CGCCAAAAA---GU
................((((((((.-...((.......(((((((---...)))))))..--..---------....))...))))))-)).......-.........---.. (  -9.26)
>DroAna_CAF1 10335 109 - 1
CACAACCGCAAAAACCGAAACUAAA-CAGCAG--CAAUAAUGCCGGCGAGCAAAAUUGUUGAGCGCCGAAAUGGACAUGGAAUUAGUU-UCUGUAUCUCGGCCAAGAGUUUGU
.......(((((.((.((((((((.-..(((.--......)))(((((..(((.....)))..)))))..............))))))-)).))..(((......)))))))) ( -26.70)
>consensus
UACAACCGCAAAAACCGAAACUAAA_CAGCAGUGCAACAAUUUCAGCGAACAAAAUUUCUGCACUCCAAAAUGGACAUGAAAUUAGUU_UCUAUUUCU_GGCCAAAAA___GU
................((((((((....((((..........................))))..(((.....))).......)))))).))...................... ( -2.52 =  -3.81 +   1.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:52 2006