Locus 3759

Sequence ID X_DroMel_CAF1
Location 9,964,215 – 9,964,312
Length 97
Max. P 0.761044
window6173

overview

Window 3

Location 9,964,215 – 9,964,312
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -19.63
Consensus MFE -18.93
Energy contribution -18.27
Covariance contribution -0.66
Combinations/Pair 1.16
Mean z-score -1.57
Structure conservation index 0.96
SVM decision value 0.50
SVM RNA-class probability 0.761044
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9964215 97 - 22224390
CUCCACUCCGCUCAACGAGCAUGUUGUACGUGGUGCUUGUCAAACAAAUGCUACAACAGCAGCAGCAACAUCAACCAUGACAAACAGCAAAAUAAAA
.........((((...)))).((((((.((((((...(((........((((.....))))......)))...))))))....))))))........ ( -21.54)
>DroEre_CAF1 26738 97 - 1
CCCCUCUCCGCCAAACGAGUGUGUUGUACGUGGUGCUUGUCAAACAAAUGCUACAACAGCGGCAGCAGCAUCAACCAUGACAAACAGCAAAAUAAAA
.....(((........)))(((.((((.((((((...(((........(((..(....)..)))...)))...))))))))))...)))........ ( -18.50)
>DroYak_CAF1 26697 97 - 1
CCACUCUCCGACAAACGAGCAUGUUGUACGUGGUGCUUGUCAAACAAAUGCUACAAUAGCGGCAGCAACAUCAACCAUGACAAACAGCAAAACAAAA
..................((.((((((.((((((...(((........(((((...)))))......)))...)))))))).))))))......... ( -18.84)
>consensus
CCCCUCUCCGCCAAACGAGCAUGUUGUACGUGGUGCUUGUCAAACAAAUGCUACAACAGCGGCAGCAACAUCAACCAUGACAAACAGCAAAAUAAAA
..................((...((((.((((((...(((........((((.....))))......)))...))))))))))...))......... (-18.93 = -18.27 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:41 2006