Locus 3758

Sequence ID X_DroMel_CAF1
Location 9,963,627 – 9,963,740
Length 113
Max. P 0.958584
window6172

overview

Window 2

Location 9,963,627 – 9,963,740
Length 113
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 70.17
Mean single sequence MFE -29.34
Consensus MFE -20.14
Energy contribution -22.07
Covariance contribution 1.92
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.69
SVM decision value 1.49
SVM RNA-class probability 0.958584
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9963627 113 - 22224390
UGUAAUGAUGCUUCC-------AGCCAAUAAUAGUAUUCGUACCACUGUGCCACUUGGACCACAUCCAAGCGAGGUGAAGAAGAUUUACGCUGGAGAAAGUGGGGAAAAGGGAGCAGAAG
........(((((((-------.((.((((....)))).)).(((((...(((((((((.....))))))....(((((.....)))))..)))....)))))......))))))).... ( -31.50)
>DroEre_CAF1 26269 103 - 1
UGUAAUCCUGUUUCCUGUAAUCUCCUAAUAACGAGUUUCGAACCACUGUGC----------------AAGCGAGGCGGAGAAGAAUUACACUGGAGAAAGUGG-GAAAAGGGAGCAGAAG
(((..((((.(((((..(..(((((..........((((...((.((.((.----------------...)).)).)).)))).........)))))..)..)-)))).))))))).... ( -27.21)
>DroYak_CAF1 26172 111 - 1
UGUAAUACUGCUCC--------ACUGAAUAAUAGGAUUCAAACCACUGUGCACUUUGGACCACAUCCAAGCGAGGUGGGGAAGAAUUGCACUGGAGAAAGUGG-GUAAAGGGAGAAGAGA
.......((.((((--------..(((((......)))))..((((((((((.(((...((((.((.....)).))))....))).))))).......)))))-......)))).))... ( -29.31)
>consensus
UGUAAUACUGCUUCC_______ACCCAAUAAUAGGAUUCGAACCACUGUGC___UUGGACCACAUCCAAGCGAGGUGGAGAAGAAUUACACUGGAGAAAGUGG_GAAAAGGGAGCAGAAG
.......((((((((.....................(((...(((((.(((...(((((.....)))))))).))))).)))......((((......)))).......))))))))... (-20.14 = -22.07 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:40 2006