| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,963,481 – 9,963,589 |
| Length | 108 |
| Max. P | 0.505564 |
| Location | 9,963,481 – 9,963,589 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 88.27 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -18.11 |
| Energy contribution | -18.33 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9963481 108 - 22224390 AAAAAAAAACCCCGACACAACAACAGUGUUGGAGAAAAAACGCUGUCCAGUCUCGUCGUUUGCCGUUGAUUGUGUGGCGCAAAUGUUAAUGAGACAAAAAGAUGUCAA .............(((((....((((((((........))))))))...((((((((((((((.(((........))))))))))...))))))).....).)))).. ( -30.40) >DroEre_CAF1 26123 108 - 1 AAAACCAGACACAGACACAACAACAACAACGUAGAAAAAACGCUGUCCAGUCUCGUCGACUGCCGUUGAUUGUGUGGCGCAAAUGUUAAUGAGACAAAAAGAUGUCAA .......(((((..((((((((((.(((.(((.......))).))).(((((.....)))))..)))).))))))........((((.....))))....).)))).. ( -24.10) >DroYak_CAF1 26027 105 - 1 AAUACAAAAAACAGACACAACA---ACAACGGGGAAAAAACGCUGUCCAGUCUCGUCGACUGCCGUUGAUUGUGUGGCGCAAAUGUUAAUGAGACAAAAAGAUGUCAA .........((((..((((.((---((((((((((..........)))((((.....)))).)))))).))))))).......)))).....((((......)))).. ( -24.00) >consensus AAAACAAAACACAGACACAACAACAACAACGGAGAAAAAACGCUGUCCAGUCUCGUCGACUGCCGUUGAUUGUGUGGCGCAAAUGUUAAUGAGACAAAAAGAUGUCAA .............(((((............(((.(........).))).(((((((..(((((((.........))))).....))..))))))).....).)))).. (-18.11 = -18.33 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:39 2006