Locus 3755

Sequence ID X_DroMel_CAF1
Location 9,961,581 – 9,961,671
Length 90
Max. P 0.854841
window6168

overview

Window 8

Location 9,961,581 – 9,961,671
Length 90
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 81.52
Mean single sequence MFE -18.97
Consensus MFE -12.72
Energy contribution -12.39
Covariance contribution -0.33
Combinations/Pair 1.15
Mean z-score -2.17
Structure conservation index 0.67
SVM decision value 0.80
SVM RNA-class probability 0.854841
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9961581 90 - 22224390
CAGCUGUUGUUCCGGAUCUCCACUAUUCUAUUCUAUAUAC-CUUGAUUCUUUUGUUACU-----GAAAAUUGAUUAGGUUCUUCCCGAGCAGCUGC
((((((((.....((....))...................-(((((((..(((......-----..)))..))))))).........)))))))). ( -17.60)
>DroEre_CAF1 24167 88 - 1
CAGCUGUUGUUCCGGAUCUCCCCUAUUC-----UAUACAU-UUUGAUUCUUUUGUUACUAUACAAAAAAAUGAUUUGGUUCUG-CCGAGCAGCUG-
((((((((((.(((((((..........-----....(..-...)(((.((((((......)))))).))))))))))....)-)..))))))))- ( -19.20)
>DroYak_CAF1 24082 85 - 1
CAGCUGUUGUUCCGGAUCUUCUCUACUC-----UAUAUUUUUUUGAUUCUUUUGUUACU-----GAAAAUUGAUUAGAUUCUUCCCGAGCAGCUG-
(((((((...((.(((.....((((.((-----...((((((.((((......))))..-----)))))).)).))))....))).)))))))))- ( -20.10)
>consensus
CAGCUGUUGUUCCGGAUCUCCACUAUUC_____UAUAUAU_UUUGAUUCUUUUGUUACU_____GAAAAUUGAUUAGGUUCUUCCCGAGCAGCUG_
((((((((.....((....))....................(((((((..(((.............)))..))))))).........)))))))). (-12.72 = -12.39 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:37 2006