Locus 3751

Sequence ID X_DroMel_CAF1
Location 9,959,140 – 9,959,256
Length 116
Max. P 0.816465
window6162

overview

Window 2

Location 9,959,140 – 9,959,256
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 97.13
Mean single sequence MFE -27.99
Consensus MFE -26.50
Energy contribution -26.83
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.95
SVM decision value 0.67
SVM RNA-class probability 0.816465
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9959140 116 - 22224390
UGCUUCAAACUAAAAGCCAAGCGCUGUAAUCAUAUUUAACUUUGGCUCGGUUAUGUGCCUCAUCUUCUGCAGCCGCAGCCUCAUCUCUCCUUCACCUGAUUUUGGUUGCUGCUGCU
.((..((((((...(((((((.(...(((......))).)))))))).)))).)).))..........(((((.((((((..(((............)))...)))))).))))). ( -29.80)
>DroSim_CAF1 8822 116 - 1
UGCUUCAAACUAAAAGCCAAGCGCUGUAAUCAUAUUUAACUUUGCCUCGGUUAUGUGCCUCAUCUUCUGCAGCCGCAGCCUCAUCUCUCCUUCACCUGAUUUUGGUUGAUGCUGCU
.((((........))))...((((.((((((.................))))))))))..........(((((..(((((..(((............)))...)))))..))))). ( -24.83)
>DroEre_CAF1 21729 115 - 1
UGCUUCAAACUAAAAGCCAAGCGCUGUAAUCAUAUUUAACUUUGCCUCGGUUAUGUGCCUCAUCUUCUGCAGCCGCAGCCGCAUCUCUCCUUCACCUGAUUUCGGUUGCUGCUGC-
.((((........))))...((((.((((((.................))))))))))..........(((((.(((((((.(((............)))..))))))).)))))- ( -29.33)
>consensus
UGCUUCAAACUAAAAGCCAAGCGCUGUAAUCAUAUUUAACUUUGCCUCGGUUAUGUGCCUCAUCUUCUGCAGCCGCAGCCUCAUCUCUCCUUCACCUGAUUUUGGUUGCUGCUGCU
.((((........))))...((((.((((((.................))))))))))..........(((((.((((((..(((............)))...)))))).))))). (-26.50 = -26.83 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:31 2006