Locus 3748

Sequence ID X_DroMel_CAF1
Location 9,958,128 – 9,958,239
Length 111
Max. P 0.643892
window6158

overview

Window 8

Location 9,958,128 – 9,958,239
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.26
Mean single sequence MFE -30.34
Consensus MFE -22.62
Energy contribution -23.26
Covariance contribution 0.64
Combinations/Pair 1.08
Mean z-score -1.72
Structure conservation index 0.75
SVM decision value 0.23
SVM RNA-class probability 0.643892
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9958128 111 - 22224390
GG-----UGGUGAUUCGCGGAAUGGUGGAGUAUUUG--GUACUCAU--ACAGACCCAGCGACAAGUUGCCGUCAUUUACUUAACUUUCACAAUUUCGAUUUUCACAUCUACAUGACUCCU
((-----.(((((....((((((.(((((((((...--))))))..--...(((.((((.....))))..)))..............))).))))))....)))).((.....))).)). ( -26.20)
>DroSec_CAF1 26094 115 - 1
GGUGGG-UGGUAAUUGGCGGAAUU--GAAGUACUUGGAGUACUCAU--AUUGACCCAGCGACAAGUUGCAGUCAUUUACUUAACUUUCACAAUUUCGAUUUACACAUCUACAUGACUCCU
.(((((-((((((....(((((((--(.(((((.....)))))...--..((((.((((.....))))..))))...............))))))))..)))).)))))))......... ( -31.60)
>DroSim_CAF1 7326 118 - 1
GGUGGGUUGGUGAUUGGCGGAAUUGUGAAGUACUUGGAGUACUCAU--AUAGACCCAGCGACAAGUUGCAGUCAUUUACUUAACUUUCACAAUUUCGAUUUACACAUCUACAUGACUCCU
.((((((..((((....((((((((((((((((.....))))....--...(((.((((.....))))..)))............))))))))))))..))))..))))))......... ( -33.50)
>DroEre_CAF1 20710 113 - 1
GG-----UGGUGAUUCGCGGAAUUGUGAAGUACUUG--GUACUUAUAUAUAGACCCAGCGACAAGUUGCCGUCGUCUACUUAACUUUCACAAUUUCGAUUUCCACAUUUACAUGACUCCU
.(-----(((.......((((((((((((((((...--))))...((..(((((.(.((((....)))).)..)))))..))...))))))))))))....))))............... ( -30.30)
>DroYak_CAF1 20486 111 - 1
GG-----UGGUGAUUCGCGGAAUUGUGGAGUAGUUG--GUACUUAU--AUAGACCCAGCGACAAGUUGCCGUCAUUUACUUAACUUUCACAAUUUCGAUUUCCACAUUUACAUGACUCCU
.(-----(((.......((((((((((((((.((((--(..((...--..))..)))))(((........))).........)).))))))))))))....))))............... ( -30.10)
>consensus
GG_____UGGUGAUUCGCGGAAUUGUGAAGUACUUG__GUACUCAU__AUAGACCCAGCGACAAGUUGCCGUCAUUUACUUAACUUUCACAAUUUCGAUUUACACAUCUACAUGACUCCU
.........(((.....((((((((((((((((.....)))).........(((.((((.....))))..)))............)))))))))))).....)))............... (-22.62 = -23.26 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:28 2006