Locus 3744

Sequence ID X_DroMel_CAF1
Location 9,956,233 – 9,956,352
Length 119
Max. P 0.892826
window6151

overview

Window 1

Location 9,956,233 – 9,956,352
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.82
Mean single sequence MFE -23.82
Consensus MFE -23.52
Energy contribution -23.02
Covariance contribution -0.50
Combinations/Pair 1.09
Mean z-score -1.79
Structure conservation index 0.99
SVM decision value 0.97
SVM RNA-class probability 0.892826
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9956233 119 - 22224390
AUAAAGCUGAAAACGCCGUGGAAGCUGACUCCUGGCGUCAGGCCAUAAAA-AAAGGUAAAACAAACAAAACAGGCUAACAAACAACAUCAACAACAACGCCGGCGUAUUCAUGAUGCACU
.....((((((.(((((((((...(((((.......))))).))))....-.....................(((.......................)))))))).))))....))... ( -26.20)
>DroSim_CAF1 5483 119 - 1
AUAAAGCUGAAAACGCCGUGGAAGCUGACUCCUGGCGUCAGGCCAUAAAA-AAAGGUAAAACAAACAAAACAGGCUAACAAACAGCAUCAACAACAACGCCGGCGUAUUCAUGAUGCACU
.....((((((.(((((((((...(((((.......))))).))))....-...(((........(......)(((.......)))............)))))))).))))....))... ( -26.70)
>DroEre_CAF1 18919 120 - 1
AUAAAGCUGAAAAUGCUGUGGGAGCUGACUCCUGGCGUCAGGCCAUAAAAAAAAGGUAAAACAAACAAAACAGGCUAACAAACAACAUCAACAACAACGCCAGCAUAUUCAUGAUGCACU
.....((((((.(((((..(((((....)))))(((((...(((..........)))...............(.....).................)))))))))).))))....))... ( -23.70)
>DroYak_CAF1 18669 118 - 1
ACAAAGCUGAAAACGCUGUGGAAGCUGACUCCUGGCGUCAGGCCAUAAA--AAAGGUAAAACAAACAAAACAGGCUAACAAACAACAUCAACAACAACGCCAGCAUAUUCAUGAUGCACU
......((((...(((((.(((.......))))))))))))(((.....--...)))...............(((.......................))).((((.......))))... ( -18.70)
>consensus
AUAAAGCUGAAAACGCCGUGGAAGCUGACUCCUGGCGUCAGGCCAUAAAA_AAAGGUAAAACAAACAAAACAGGCUAACAAACAACAUCAACAACAACGCCAGCAUAUUCAUGAUGCACU
.....((((((.(((((((((...(((((.......))))).))))..........................(((.......................)))))))).))))....))... (-23.52 = -23.02 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:21 2006