| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,127,738 – 1,127,856 |
| Length | 118 |
| Max. P | 0.670177 |
| Location | 1,127,738 – 1,127,856 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -28.48 |
| Consensus MFE | -17.94 |
| Energy contribution | -18.48 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1127738 118 + 22224390 CUGUAUGAAAGCACUAUUAGAGUGACCGCAUAUGUAUUUCCUUUCGAGUGCCGUGCACACACCGGAAUAUUACAUACAUGUUGGUCACACAUUUCCUCAUAUGUACGUACGUGCAUGA ..........((((.......(((((((((((((((.((((....(.((((...)))).)...))))...))))))..)).)))))))((((........))))......)))).... ( -30.90) >DroSec_CAF1 24393 113 + 1 GUGUAUGAAAGCACUAUUAGUGUGACCGUAUAUGUGUUUCCUUUCGAGUGCCGUGUACACACCGGAAUAUUAUAUAC-UGUUGGUCACACAUUUCCUCAUAUGUA----CGUGCAUGA ((((......)))).....(((((((((((((((...((((....(.((((...)))).)...))))...)))))))-....)))))))).........(((((.----...))))). ( -29.60) >DroSim_CAF1 25819 113 + 1 GUGUAUGAAAGCACUAUUAGAGUGACCGCAUAUGUGUUUCCUUUCGAGUGCCGUGCACACACCGGAAUAUUACAUAC-UGUUGGUCACACAUUUCCUCAUAUGUA----CGUGCAUGA (((((((..............(((((((((((((((.((((....(.((((...)))).)...))))...)))))).-)).)))))))((((........)))).----))))))).. ( -32.20) >DroEre_CAF1 25629 109 + 1 AUGUACUAAAACACUAUCAGUGUGACCGCAUAAGUAUUUCCUUUGGAGUGCCGCGCACACAGCUGCAUAUUACACAC-UGUUGGUCACACAUUUCCUCAUACG--------AGCAUGA ................((((((((((((((...(((((((....))))))).((((.....)).))...........-)).))))))))).....(((....)--------))..))) ( -25.40) >DroYak_CAF1 25233 93 + 1 AUGUACCAACGCACUAUUAGUGUGACCGCACAUGUAUUUCCUU-------------GCACAGCGGAGUAUUAUGUGC-UGUUGGCCACACAUUUCCCCAUACG--------UUCU--- .(((.(((((((((.....))))....(((((((((((((((.-------------....)).)))))).)))))))-.)))))..)))..............--------....--- ( -24.30) >consensus AUGUAUGAAAGCACUAUUAGUGUGACCGCAUAUGUAUUUCCUUUCGAGUGCCGUGCACACACCGGAAUAUUACAUAC_UGUUGGUCACACAUUUCCUCAUAUGUA____CGUGCAUGA ...................(((((((((((((((((.((((......((((...)))).....))))...))))))..)).)))))))))............................ (-17.94 = -18.48 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006