Locus 3736

Sequence ID X_DroMel_CAF1
Location 9,949,358 – 9,949,475
Length 117
Max. P 0.555448
window6127

overview

Window 7

Location 9,949,358 – 9,949,475
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.33
Mean single sequence MFE -23.73
Consensus MFE -22.15
Energy contribution -22.40
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.93
SVM decision value 0.04
SVM RNA-class probability 0.555448
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9949358 117 + 22224390
AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCAAUUUGAGCAGGACAAAAAGUAAAAA---AGCAACAAAAACGGCU
...((((((((.....))))))))((((......(((..((((...(........)..))))....(((.(((((.......))))))))...........---.)))......)))).. ( -23.30)
>DroSec_CAF1 12248 117 + 1
AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCAAUUUGAGCAGGACAAAAAGCAAAAA---AGCAACAAAAACGGUA
....(((((((.....)))))))(((((......(((....(((..........(((.....))).(((.(((((.......))))))))....)))....---.)))......))))). ( -25.10)
>DroEre_CAF1 12058 112 + 1
AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCACUUUGAGCCGGACAAAA--------AGCAGCAACAAAAACGGUA
..(((((..(((((((...(((((((........(((.....))))))))))..(((.....)))..))))..)))..)))))(((.......--------..............))).. ( -20.90)
>DroYak_CAF1 11777 120 + 1
AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCAAUUUGAGCAGGACAAAAAAAAAACAAGCAGCAACAAAAACGGUA
....(((((((.....)))))))(((((....(((.....((((..(((.....(((.....))).(((.(((((.......)))))))).......)))..))))..)))...))))). ( -25.60)
>consensus
AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCAAUUUGAGCAGGACAAAAAG_AAAAA___AGCAACAAAAACGGUA
...((((((((.....))))))))((((......(((..((((...(........)..))))....(((.(((((.......))))))))...............)))......)))).. (-22.15 = -22.40 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:59 2006