Locus 3734

Sequence ID X_DroMel_CAF1
Location 9,940,189 – 9,940,303
Length 114
Max. P 0.992765
window6122

overview

Window 2

Location 9,940,189 – 9,940,303
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.45
Mean single sequence MFE -30.27
Consensus MFE -27.80
Energy contribution -28.30
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.92
SVM decision value 2.35
SVM RNA-class probability 0.992765
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9940189 114 - 22224390
CAG------CAACAAAAACGAAGCCAACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGCAGCCCCAAGGGGCGAACAUGGGUUAAAACGAAAGUGAACCCAGCCCCCCAUAUCGUCA
...------........(((((..........))))).((((......((((......)))).((((....)))).....((((((...((....)).))))))))))............ ( -33.60)
>DroSec_CAF1 9900 120 - 1
CAGUAACAGCAAAAAAAACGAAGCCAACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGCAGCCCCGAGGGUCGAACAUGGGUUAAAACGAAAGUGAACCCAGCCCCCCAUAUCGUCA
.................((((............(((..(((((((((.(......))))))..)))))))(((..(....((((((...((....)).)))))).)..)))...)))).. ( -29.90)
>DroEre_CAF1 9623 114 - 1
CAA------CAACAGAAACGAAGCAAACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGUAGCCCCGAGGGGCGAACAUGGGUUAAAACGAAAGUGAACCCAACCCCCCAUAUCGUCA
...------........((((............(((..(((((((((.(......))))))..)))))))((((.(....((((((...((....)).))))))..)))))...)))).. ( -31.10)
>DroYak_CAF1 10024 114 - 1
CAA------CAACAAAAACGAACCAGACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGUAGCCCCGAGGGCCGAACAUGGGUUAAAACGAAAGUGAACCCAACCCCCCGUAUCGCCA
...------................((.((...(((..(((((((((.(......))))))..)))))))(((.......((((((...((....)).))))))....))))).)).... ( -26.50)
>consensus
CAA______CAACAAAAACGAAGCAAACACAAUUCGUAGGGCCAAAACGUAAUCUCUUUUGCAGCCCCGAGGGGCGAACAUGGGUUAAAACGAAAGUGAACCCAACCCCCCAUAUCGUCA
.................(((((..........))))).(((((((((.(......))))))..))))...((((.(....((((((...((....)).)))))).).))))......... (-27.80 = -28.30 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:55 2006