Locus 3733

Sequence ID X_DroMel_CAF1
Location 9,939,910 – 9,940,001
Length 91
Max. P 0.956884
window6121

overview

Window 1

Location 9,939,910 – 9,940,001
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 94.51
Mean single sequence MFE -22.50
Consensus MFE -19.80
Energy contribution -20.30
Covariance contribution 0.50
Combinations/Pair 1.12
Mean z-score -2.45
Structure conservation index 0.88
SVM decision value 1.47
SVM RNA-class probability 0.956884
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9939910 91 + 22224390
UUAUCAAUAUAACGGGCGAUUAUCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUUGCCAUUUU
..............((((((((((.....))))))((..((((((((..((((....))))..))))))))...))......))))..... ( -22.10)
>DroSec_CAF1 9656 89 + 1
UUAUCAAUAUAACGGGCGAUUAUCUGUUUGAUGGUGCAUUUAAUAAGUGGUUAAUAAUAACUGUUUGUGGACUGGCUUUUAUG--CAUUUU
............(((((.((((((.....)))))))).....(((((..((((....))))..)))))...)))((......)--)..... ( -17.00)
>DroEre_CAF1 9365 91 + 1
UUAUCAAUAUAACGGGCGAUUAUCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGCUUGUGGAUUGGCCUUUAUGGCCAUUUU
...............((.((((((.....))))))))..((((((((..((((....))))..)))))))).(((((.....))))).... ( -27.80)
>DroYak_CAF1 9761 91 + 1
UUAUCAAUACAACGGGCGAUUAUCUGUCUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUGGCCAUUUU
.........((.((((((......)))))).))......((((((((..((((....))))..)))))))).(((((.....))))).... ( -23.10)
>consensus
UUAUCAAUAUAACGGGCGAUUAUCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUGGCCAUUUU
...............((.((((((.....))))))))..((((((((..((((....))))..)))))))).(((((.....))))).... (-19.80 = -20.30 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:54 2006