Locus 3731

Sequence ID X_DroMel_CAF1
Location 9,937,030 – 9,937,135
Length 105
Max. P 0.875607
window6118

overview

Window 8

Location 9,937,030 – 9,937,135
Length 105
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.16
Mean single sequence MFE -24.13
Consensus MFE -16.71
Energy contribution -18.77
Covariance contribution 2.06
Combinations/Pair 1.04
Mean z-score -2.05
Structure conservation index 0.69
SVM decision value 0.89
SVM RNA-class probability 0.875607
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9937030 105 + 22224390
ACAGACAG----ACACCAAAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUUGUACAUGCCCACAAAUUAACAUGUUUUGCACGGCCAACGCAACAAAAUGCUGCAG-----------
........----............(((....))).......((.((((((((((((....(((..((((.........))))...)))....)))))))))))).))..----------- ( -24.50)
>DroSec_CAF1 6802 109 + 1
ACACACACACGCACACCAAAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUUGUGCAUGCCCACAAAUUAACAUGUUUUGCACGGCCAACGCAACAAAAUGCUGCAG-----------
..........(((.(((.......(((....)))......))).(((((((((((((...(((..((((.........))))...)))...))))))))))))))))..----------- ( -28.82)
>DroEre_CAF1 6588 104 + 1
ACAAA----------CCAUAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUA------GCCGACAAAUUAACAUGUUUUGCACAGCCAACGCAACAAAAUGCUGCAGUUCCACAGUGU
.....----------.........(((...(((.....((((((((.....)))------)))))((((.........))))....)))...))).....((((((........)))))) ( -21.90)
>DroYak_CAF1 6973 97 + 1
ACACAC------ACGCCAUAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUA------GACCACAAAUUAACAUGUUUUGCACAGCCAACGCAGCAAAAUGCUGCAG-----------
......------..(((.............))).......(((((.....((((------((..(((........))))))))))))))...(((((.....)))))..----------- ( -21.32)
>consensus
ACACAC______ACACCAAAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUA______GCCCACAAAUUAACAUGUUUUGCACAGCCAACGCAACAAAAUGCUGCAG___________
........................(((....))).......((.((((((((((((....(((..((((.........))))...)))....)))))))))))).))............. (-16.71 = -18.77 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:51 2006