| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,125,835 – 1,126,037 |
| Length | 202 |
| Max. P | 0.920119 |
| Location | 1,125,835 – 1,125,944 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.28 |
| Mean single sequence MFE | -18.01 |
| Consensus MFE | -10.46 |
| Energy contribution | -10.46 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1125835 109 - 22224390 CAUUUUUAACUUUUAUAUA----GUUCUACUUGUACAUACACACGUACAUAGUAU----GUAUCCCGAAAGAUGAAAACAUUUUUCAGCUGCUAAGCUUAGUUAUCCCCC-ACAUUCG ......(((((...(((((----...(((..(((((........))))))))..)----))))...((((((((....))))))))((((....)))).)))))......-....... ( -18.40) >DroSec_CAF1 22561 97 - 1 CAUUUUUAACUUUUAUAUA--------------------CGCGCGUACAUAGUAUGUAUGUAUCCCGAAAGAUGAAAACAUUUUUCAGCUGCUAAGCUUAGUUAUCCCCC-ACAUUCG ......(((((.....(((--------------------((..(((((...)))))..)))))...((((((((....))))))))((((....)))).)))))......-....... ( -19.40) >DroSim_CAF1 23912 117 - 1 CAUUUUUAACUUUUAUAUACACAGCUCUACUUGCACAUACACGCGUACAUAGUAUGUAUGUAUCCCGAAAGAUGAAAACAUUUUUCAGCUGCUAAGCUUAGUUAUCCCCC-ACAUUCG ......(((((..........(((((........(((((((..(.......)..))))))).....((((((((....)))))))))))))........)))))......-....... ( -23.57) >DroEre_CAF1 23716 97 - 1 CAUUUUAAACUUUUAUAUG----GCUCUA------CAUACA-----------UACGUACGUAUCCCGAAAGAUGAAAACAUUUUUCAGCUGCUUAGCUUAGUUAUCCCCCAACGUUCG ...............((((----......------))))..-----------..((.((((.....((((((((....))))))))((((....)))).............)))).)) ( -15.20) >DroYak_CAF1 23321 88 - 1 CAUUUUAAACUUUUAU-----------UA------UGAACA-----------UAUGU--GUAUUCCGAAAGAUGAAAACAUUUUUCAGCUGCUUAGCUUAGUUAUCCCCCCACGUUCG ................-----------..------.((((.-----------.....--.......((((((((....))))))))((((....))))...............)))). ( -13.50) >consensus CAUUUUUAACUUUUAUAUA____G_UCUA______CAUACAC_CGUACAUAGUAUGUA_GUAUCCCGAAAGAUGAAAACAUUUUUCAGCUGCUAAGCUUAGUUAUCCCCC_ACAUUCG .......((((.......................................................((((((((....))))))))((((....)))).))))............... (-10.46 = -10.46 + -0.00)
| Location | 1,125,944 – 1,126,037 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 75.28 |
| Mean single sequence MFE | -23.54 |
| Consensus MFE | -6.70 |
| Energy contribution | -9.23 |
| Covariance contribution | 2.53 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.28 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1125944 93 + 22224390 GAGUUAUGAAGGGAAUGUUUGGCUAAUGCCAUUCGGAUUUCCCUUGAAAAACGUCGUUGGUUUAGUUAAAGGCUGAGUUAAAGUUGAGUCAUA ........(((((((((..((((....))))..))...)))))))((..(((....((..((((((.....))))))..)).)))...))... ( -24.40) >DroSec_CAF1 22658 87 + 1 GAGUUAUGAAGGGAAUGUUUGGCUACUGACAUUCGUAUUUCCCUUGAAAAACGUCGUUGGUUUAGUUAAAGGCUCU------UCUGAGUCAUA ((.(((.((((((....(((((((((..((...(((.((((....)))).)))..))..))..)))))))..))))------))))).))... ( -24.20) >DroSim_CAF1 24029 87 + 1 GAGUUAUGAAGGGAAUGUUUGGCUACUGACAUUCGUAUUUCCCUUGAAAAACGUCGUUGGUUUAGUUAAAGGCUCU------UCUGAGUCAUA ((.(((.((((((....(((((((((..((...(((.((((....)))).)))..))..))..)))))))..))))------))))).))... ( -24.20) >DroEre_CAF1 23813 71 + 1 GAGUUUUGAAGGGAAUGCUCGGUUAAUGCCAUUGGGCUUUCCCUUGAAAAACGUCGUUGGUU----------------------UGAGUCAUA (((((((.(((((((.(((((((....)))...)))).)))))))..))))).)).......----------------------......... ( -21.60) >DroYak_CAF1 23409 74 + 1 GAGUUGU-------------GGCUAAUGCCAUUGGGCUUUCCCUCGAAAAACGUCGUUGGUUGAGUCAAAGGCUAU------GUUGAGUCACG .....((-------------((((.(((((....(((((..((.(((......)))..))..)))))...))).))------....)))))). ( -23.30) >consensus GAGUUAUGAAGGGAAUGUUUGGCUAAUGCCAUUCGGAUUUCCCUUGAAAAACGUCGUUGGUUUAGUUAAAGGCUCU______GCUGAGUCAUA (((((...(((((((....((((....)))).......)))))))....))).))..((..((((..................))))..)).. ( -6.70 = -9.23 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:53 2006