| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,924,223 – 9,924,320 |
| Length | 97 |
| Max. P | 0.889475 |
| Location | 9,924,223 – 9,924,320 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -31.25 |
| Consensus MFE | -22.77 |
| Energy contribution | -22.22 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9924223 97 - 22224390 GUCUUUGGACCAAAUCAAGUGUCUGGAAAUAAUUUCAUUGACU------------UAGAUAACAAUGGUCCACCUGGCUUUGGACCACCGGGCAGGAACUUUGGACCCA-- ((((.(((((((.(((((((...(((((....)))))...)))------------).))).....)))))))((((.((..((....)))).))))......))))...-- ( -25.80) >DroSec_CAF1 21390 97 - 1 GUCUUUGGACCAAAUCAAGUGCCUGGAAAUAACUUCAUUGACU------------UGGAUAACAAUGGUCCACCUAACUUUGGACCACCGGGCAGGAACUUUGGACCCA-- ......((.(((((((...(((((((.......((((......------------))))......(((((((........)))))))))))))).))..))))).))..-- ( -30.50) >DroSim_CAF1 21575 97 - 1 GUCUUUGGACCAAAUCAAGUGCCUGGAAAUAACUUCAUUGACU------------UGGAUAACAAUGGUCCACCUAACUUUGGGCCACCGGGCAGGAACUUUGGACCCA-- ......((.(((((((...(((((((.......((((......------------))))......(((((((........)))))))))))))).))..))))).))..-- ( -29.90) >DroEre_CAF1 21826 97 - 1 AGCUUUGGUCCGAAUCAAGUGCCUGGAAAUAACUUCAUAGACU------------UCGAUGGCAAUGGACCACCGGGCUUUGGUCCACCGGGCAGAAACUUUGGACCCA-- ......((((((((.....(((((((........((((.(...------------.).))))...(((((((........)))))))))))))).....))))))))..-- ( -34.90) >DroYak_CAF1 21624 97 - 1 GGCUUUGGACCGAAUCAAGUGCCUGGAAAUAACUUCAUCGACU------------UCGAUGGCAAUGGUCCACCUGGCUUUGGUCCACCGGGCAGAAACUUUGGACCCA-- ......((.(((((.....(((((((........((((((...------------.))))))...(((.(((........))).)))))))))).....))))).))..-- ( -31.50) >DroPer_CAF1 24723 107 - 1 ----UGGGACCCGGGCAGGUUCCGGGCGAUAAUUUCACGGACUUUAGUAAGAACUUCGAUGGAAAUGGUCCCCCCGGCUUCGGGCCGAAUGGCAGGAAUUUCGGACCUGGA ----......((((((.(((((((((.(((.(((((.((((.(((.....))).))))...))))).)))))).((((.....)))).......))))))...).))))). ( -34.90) >consensus GUCUUUGGACCAAAUCAAGUGCCUGGAAAUAACUUCAUUGACU____________UCGAUAACAAUGGUCCACCUGGCUUUGGACCACCGGGCAGGAACUUUGGACCCA__ ......((.(((((.....(((((((......(......).........................(((((((........)))))))))))))).....))))).)).... (-22.77 = -22.22 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:40 2006