Locus 3719

Sequence ID X_DroMel_CAF1
Location 9,914,217 – 9,914,335
Length 118
Max. P 0.993830
window6095 window6096

overview

Window 5

Location 9,914,217 – 9,914,311
Length 94
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 91.27
Mean single sequence MFE -22.22
Consensus MFE -19.94
Energy contribution -20.00
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -2.78
Structure conservation index 0.90
SVM decision value 2.35
SVM RNA-class probability 0.992826
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9914217 94 + 22224390
UUAUCUACCAGGCGAUCUCCUUGGCUCGUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACCUCCCCACCCC-AAGC
.....((((((((((.((..(((((..........)))))..)).)))))....)))))((((.....))))..................-.... ( -23.10)
>DroSec_CAF1 11663 92 + 1
CUAUCUACCAAACGAUCUCCUUGGCUCGUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACC--CCCAUCCC-AAAC
.....((((((.(((.((..(((((..........)))))..)).))).....))))))((((.....))))........--........-.... ( -16.70)
>DroSim_CAF1 11840 92 + 1
CUAUCUACCAGGCGAUCUCCUUGGCUCGUUAAUUUGGCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACC--CCCAUCCC-AAAC
..........(((.(......(((((.(..((((((((((.....))))))))))..)))))).....).))).......--........-.... ( -25.40)
>DroYak_CAF1 11632 93 + 1
CUAUCUACCAGACGAUCUCCUUGGCUCGUUAAUUUGGCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAAACACA--CCAAACCGAAAAU
.....((((.(((((((.....)).)))))((((((((((.....))))))))))))))((((.....))))........--............. ( -23.70)
>consensus
CUAUCUACCAGACGAUCUCCUUGGCUCGUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACC__CCCAUCCC_AAAC
.....((((.(((((((.....)).)))))((((((((((.....))))))))))))))((((.....))))....................... (-19.94 = -20.00 +   0.06)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 6

Location 9,914,244 – 9,914,335
Length 91
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 91.71
Mean single sequence MFE -18.78
Consensus MFE -17.61
Energy contribution -17.93
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -2.54
Structure conservation index 0.94
SVM decision value 2.43
SVM RNA-class probability 0.993830
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9914244 91 + 22224390
GUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACCUCCCCACCCC-AAGCUCCCUCGAGAAAACCUCGACAAUU
........((((((..(((((((.....)))))..))..))))))..................-........(((((.....)))))..... ( -16.80)
>DroSec_CAF1 11690 89 + 1
GUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACC--CCCAUCCC-AAACCCCCUCGAGAAAACCUCGACAAUU
........((((((..(((((((.....)))))..))..))))))........--........-........(((((.....)))))..... ( -16.80)
>DroSim_CAF1 11867 89 + 1
GUUAAUUUGGCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACC--CCCAUCCC-AAACCCCCUCGAGAAAACCUCGACAAUU
.((((((((((((.....))))))))))))..((((.....))))........--........-........(((((.....)))))..... ( -21.80)
>DroYak_CAF1 11659 90 + 1
GUUAAUUUGGCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAAACACA--CCAAACCGAAAAUCCCCUUGAGAAAACCUCGACAAUU
.((((((((((((.....))))))))))))..((((.....))))........--.................(((((.....)))))..... ( -19.70)
>consensus
GUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACC__CCCAUCCC_AAACCCCCUCGAGAAAACCUCGACAAUU
.((((((((((((.....))))))))))))..((((.....))))...........................(((((.....)))))..... (-17.61 = -17.93 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:32 2006