Locus 3717

Sequence ID X_DroMel_CAF1
Location 9,908,264 – 9,908,369
Length 105
Max. P 0.629960
window6091

overview

Window 1

Location 9,908,264 – 9,908,369
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.11
Mean single sequence MFE -27.36
Consensus MFE -6.75
Energy contribution -6.95
Covariance contribution 0.20
Combinations/Pair 1.36
Mean z-score -1.72
Structure conservation index 0.25
SVM decision value 0.20
SVM RNA-class probability 0.629960
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9908264 105 - 22224390
GUUU--UAUUGUUGUUCUUUCUACUGCUUUUUUUU-----UUUUUUCUUGUUUCCUGUCGAACG--UGAAUGAGAAGG------AGAAGAAGAAGCGGAAACAGGCAACGUCAUAAAUAU
..((--(((((((((.((.....((((((((((((-----((((((((..((..(........)--..))..))))))------))))))))))))))....))))))))..)))))... ( -31.30)
>DroSec_CAF1 5729 104 - 1
GUUU--UAUUGUUGUUCUUUCCACGGCUUUU------UUUUUUAUUCUUGUUUCCUGUCGAACG--UGAAUGAGAAGA------AGAAGAAGAAGCGGAAACAGGCAGCGUCAUAAAUAU
..((--((((((((((.(((((...((((((------((((((.((((..((..(........)--..))..))))..------)))))))))))))))))..)))))))..)))))... ( -27.80)
>DroEre_CAF1 6149 109 - 1
GUUUAUUGU---UGUUCUUUCUACGGCUUUUGU------UUUUGUUCUUGUUUCCUGUCGAACG--UGAAUGUGAAGAAAAAUAAGAAGAAGAAGCGGAAACAGGCAGCGUCAUAAAUAU
(((((((((---((((.(((((.(...((((((------((((.(((....(((.((.....))--.)))...))).)))))))))).).))))).(....).)))))))..)))))).. ( -21.80)
>DroYak_CAF1 5712 110 - 1
GUUUAUUGUUGUUGUUCUUUCUACUGGCUUUGUUU--UUUUUUGUUCUUGUUUCCUGUCGAACG--UGAAUGCGAAGA------AGAAGAAGAAGCGGAAACGGGCAGCGUCAUAAAUAU
((((((.(.((((((((((((..((..((((.(((--((((((((((.(((((......)))))--.))..)))))))------)))))))).))..)))).)))))))).))))))).. ( -29.90)
>DroAna_CAF1 5146 112 - 1
CUUC--UCUUCUUAUUUAAUCAGGUCCUUUCUUACUCAGUUUUUUUUCCGAUGGCUGUCGAACAGUCGAAAGAGAGGA------AGCAGAAGGAGCGAAAACAGGCAUCGCCAUAAAUAU
....--......((((((....(.(((((.((......((((((((((...((((((.....))))))...)))))))------)))))))))).).......(((...))).)))))). ( -26.00)
>consensus
GUUU__UAUUGUUGUUCUUUCUACUGCUUUUGU______UUUUGUUCUUGUUUCCUGUCGAACG__UGAAUGAGAAGA______AGAAGAAGAAGCGGAAACAGGCAGCGUCAUAAAUAU
..............................................(((((((((..((................................))...)))))))))............... ( -6.75 =  -6.95 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:27 2006