Locus 3706

Sequence ID X_DroMel_CAF1
Location 9,870,434 – 9,870,550
Length 116
Max. P 0.776550
window6071

overview

Window 1

Location 9,870,434 – 9,870,550
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.26
Mean single sequence MFE -28.74
Consensus MFE -24.77
Energy contribution -25.10
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.86
SVM decision value 0.54
SVM RNA-class probability 0.776550
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9870434 116 - 22224390
CCACGACUCUGACUGCUCCGCUUUUUGCUCCUUGGAGGCUUUCUUAAUCGCCUUUUGGCGUGACAGGAGGCCACCAAAUACCAAAAAUCAAAAAACGAAAACCAAAAA----CACCGAUA
...................(.((((((....((((.((((((((....((((....))))....)))))))).))))....)))))).)...................----........ ( -27.00)
>DroSec_CAF1 15104 116 - 1
CCACGACUCUGACUGCUCCGUUUUUUGCUCCUUGGAGGCUUUCUUAAUCACCUUUUGGCGUGACAGGAGGCCACCAAAUACCAAAAAUCAAAAAACGAAAACCAAAAA----CACCGAUA
..................(((((((((....((((.((((((((...(((((.....).)))).)))))))).))))...........)))))))))...........----........ ( -24.46)
>DroYak_CAF1 14763 120 - 1
GCACGACUCGGAGUGCUCCGCUUUUUGCUCCUUGGAGGCUUUCUUAAUCGCCUUUUGGCGUGACAGGAGGCCACCAAAUACCAAAAAUCAAAAAACCAAAACCAAAAAGCAAAACCGUUA
((((........))))...((((((((....((((.((((((((....((((....))))....)))))))).)))).........................)))))))).......... ( -34.75)
>consensus
CCACGACUCUGACUGCUCCGCUUUUUGCUCCUUGGAGGCUUUCUUAAUCGCCUUUUGGCGUGACAGGAGGCCACCAAAUACCAAAAAUCAAAAAACGAAAACCAAAAA____CACCGAUA
...................(.((((((....((((.((((((((....((((....))))....)))))))).))))....)))))).)............................... (-24.77 = -25.10 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:09 2006