Locus 3703

Sequence ID X_DroMel_CAF1
Location 9,868,181 – 9,868,289
Length 108
Max. P 0.559503
window6062

overview

Window 2

Location 9,868,181 – 9,868,289
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.53
Mean single sequence MFE -13.80
Consensus MFE -9.23
Energy contribution -9.60
Covariance contribution 0.37
Combinations/Pair 1.11
Mean z-score -1.59
Structure conservation index 0.67
SVM decision value 0.05
SVM RNA-class probability 0.559503
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9868181 108 - 22224390
UCAAAAAGACAGCGAAAAAAAAAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGAAAAGAAAACUAUAAUGCCA----AAG-AGCA-------ACAAAAAAUAUGUAUUAAAAAGGCAA
...........................((((.((((((((((((.....(((.....)))...)))))..(((..----...-.)))-------..........)))))))...)))).. ( -13.40)
>DroSec_CAF1 12906 109 - 1
UCAAAAAGACAGCAAAA---AUAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGAAAAGAAAACUAUAAUGCCAAACAAAG-AGCU-------ACAAAAAAUAUGUAUUAUACAGACAA
.................---.......((((((((((((....((..(((((((.........................)))-))))-------.)).......)))))..))))))).. ( -14.21)
>DroSim_CAF1 13071 108 - 1
UCAAAAAGACAGCAAAAAAAAAAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGAAAAGAAAACUAUAAUGCCA----AAG-AGCU-------ACAAAAAAUAUGUAUUAUACAGACAA
...........................((((((((((((....((..(((((((.....................----)))-))))-------.)).......)))))..))))))).. ( -14.40)
>DroYak_CAF1 12486 114 - 1
UCAAGAAA--GGCAAACAAAAAAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGGAAAGAAAACUAUAAUACCA----AAUAAGCUGCAAACAAAAAAAUAUAUAUAUUAUACAGACAA
........--.................(((((((........((...(((((((((................)))----)..)))))....)).....((((....)))).))))))).. ( -13.19)
>consensus
UCAAAAAGACAGCAAAAAAAAAAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGAAAAGAAAACUAUAAUGCCA____AAG_AGCU_______ACAAAAAAUAUGUAUUAUACAGACAA
...........................(((((((...(((.(((....))).)))............((((((................................))))))))))))).. ( -9.23 =  -9.60 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:01 2006