Locus 3701

Sequence ID X_DroMel_CAF1
Location 9,862,537 – 9,862,641
Length 104
Max. P 0.542199
window6058

overview

Window 8

Location 9,862,537 – 9,862,641
Length 104
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 79.55
Mean single sequence MFE -32.50
Consensus MFE -18.80
Energy contribution -19.76
Covariance contribution 0.96
Combinations/Pair 1.20
Mean z-score -1.76
Structure conservation index 0.58
SVM decision value 0.02
SVM RNA-class probability 0.542199
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9862537 104 + 22224390
UA---G-UAGUUGCUGUUUGGGUUGCUUUUUUUAU---UUG---GCUGCUGCUGCUGGGAGGCAGUGGAGCAUUCAGCCA----AGAUCUGUGCAGAUUGCAUAAAAUACAGACAGAC
..---.-......(((((((..((..........(---(((---(((((..(((((....)))))..)......))))))----))...(((((.....))))).))..))))))).. ( -33.50)
>DroPse_CAF1 7211 107 + 1
UU---GUUAGUGGCCAAUGCUGCUGCUGUAGUU--------GUUGUUGUUGGCUUUGGUGGUCAGUGGAGCAUAUAGCCAUCCGAGAUCUGUGCAUAUUGCAUAAAAAACAUGCACUC
..---...((..((....))..))((((((..(--------(((.(..((((((.....))))))..)))))))))))............((((((.((........)).)))))).. ( -28.00)
>DroSec_CAF1 7312 110 + 1
UA---G-UAGUUGCUGUUUGGGUUGCUUUUUUUAUUAUUUGGUUGCUGCUGCUGCAGGGAGGCAGUGGAGCAUUUAGCCA----AGAUCUGUGCAUAUUGCAUAAAAUACAGACAGAC
..---.-......(((((((..((.............((((((((((.(..((((......))))..)))))....))))----))...(((((.....))))).))..))))))).. ( -33.10)
>DroSim_CAF1 7429 110 + 1
UA---G-UAGUUGCUGUUUGGGUUGCUUUUUUUAUUAUUUGGUUGCUGCUGCUGCUGGGAGGCAGUGGAGCAUUUAGCCA----AGAUCUGUGCAGAUUGCAUAAAAUACAGACAGAC
..---.-......(((((((..((.............((((((((((.(..(((((....)))))..)))))....))))----))...(((((.....))))).))..))))))).. ( -34.40)
>DroYak_CAF1 6665 105 + 1
UAGCAG-UAGUUGCUGUUUGGUUUGCUUUUU--------UGGUUGCUGUUGCUGCUGGGAGGCAGUGGAGCAUUUAGCCA----AGAUCUGUGCAGAUUGCAUAAAAUACAGACACCC
.(((((-(....))))))..(((((...(((--------((((((((.(..(((((....)))))..)))))....))))----)))..(((((.....))))).....))))).... ( -33.50)
>consensus
UA___G_UAGUUGCUGUUUGGGUUGCUUUUUUUAU___UUGGUUGCUGCUGCUGCUGGGAGGCAGUGGAGCAUUUAGCCA____AGAUCUGUGCAGAUUGCAUAAAAUACAGACAGAC
.............((((((((((((((..................(..(((((.......)))))..)))))....)))..........(((((.....))))).....))))))).. (-18.80 = -19.76 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:58 2006