Locus 370

Sequence ID X_DroMel_CAF1
Location 1,122,913 – 1,123,023
Length 110
Max. P 0.612518
window555

overview

Window 5

Location 1,122,913 – 1,123,023
Length 110
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 86.85
Mean single sequence MFE -36.08
Consensus MFE -28.89
Energy contribution -30.32
Covariance contribution 1.44
Combinations/Pair 1.10
Mean z-score -1.50
Structure conservation index 0.80
SVM decision value 0.16
SVM RNA-class probability 0.612518
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1122913 110 + 22224390
ACCUUAAAGUUAGUAUCUCACAUGGCCACCAAGCCAUAUGGCAAUCACGGAGAGCAACCCGUGACCCAACUCGGGGUCACCAGCGGGUCUGUGCUAAGUUUCGGGCCUCU
.(((.(((.(((((.((((...(((...))).(((....))).......))))((((((((((((((......)))))....)))))).)))))))).))).)))..... ( -38.10)
>DroSec_CAF1 19656 108 + 1
ACCUUGAAGUUAGUAUCUCAUAUGGCCACCAAGAC--AUGGCAAUCACGGAGAGCAACCCGUGACCCGACUCGGGGUCACCAGCGGGUCUAUGCUAAGUUUCGGGCCUCU
.(((.(((.((((((((((.....((((.......--.)))).......))))...(((((((((((......)))))....))))))...)))))).))).)))..... ( -37.00)
>DroSim_CAF1 20602 108 + 1
ACCUUGAAGUUAGUAUCUCAUAUGGCCACCAAGGC--AUGGCAAUCACGGAGAGCAACCCGUGACCCGACUCGGGGUCACCAGCGGGUCUAUGCUAAGUUUCGGGCCUCU
.(((.(((.((((((((((.....((((.......--.)))).......))))...(((((((((((......)))))....))))))...)))))).))).)))..... ( -37.00)
>DroEre_CAF1 20725 95 + 1
ACCUUGAAGUUAGCAUCGCAUAUGGUCACCAAGAC--AC-------------AGCAACCCGUGACCCGACUGGGGGUCGCCAGGUGGUCUAUGCUAAGUUUCGGGCCUCU
.(((.(((.(((((((......(((...)))((((--..-------------....(((.(((((((......)))))))..))).))))))))))).))).)))..... ( -32.20)
>consensus
ACCUUGAAGUUAGUAUCUCAUAUGGCCACCAAGAC__AUGGCAAUCACGGAGAGCAACCCGUGACCCGACUCGGGGUCACCAGCGGGUCUAUGCUAAGUUUCGGGCCUCU
.(((.(((.((((((((((.....((((..........)))).......))))...(((((((((((......)))))))....))))...)))))).))).)))..... (-28.89 = -30.32 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:46 2006