Locus 3699

Sequence ID X_DroMel_CAF1
Location 9,860,438 – 9,860,548
Length 110
Max. P 0.838815
window6056

overview

Window 6

Location 9,860,438 – 9,860,548
Length 110
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 82.33
Mean single sequence MFE -25.27
Consensus MFE -18.09
Energy contribution -17.43
Covariance contribution -0.66
Combinations/Pair 1.14
Mean z-score -2.11
Structure conservation index 0.72
SVM decision value 0.74
SVM RNA-class probability 0.838815
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9860438 110 + 22224390
AC-CCAUAUACCCAUUGAUAUCAUUGAUACACCAUU-GAAGAGUCCGAAAACACCAAAAUAACCAUUGGAGGGCAGAAAGCGGACACAGUCAGAUGGAUAUGGUAUGUGAAA
..-.((((((((((.((....)).)).....(((((-((...((((.......((((........))))...((.....))))))....))).))))....))))))))... ( -27.20)
>DroSec_CAF1 5303 93 + 1
AGUGCGUGUACCC-------------------CAUUGGAAGAGUCCGAAAACACCAAAAUAACCAUUGGAGGGCAGAAAGCGGACACAGUCAGAUGGAUAUGGUAUGUGAAA
....((..(((((-------------------((((.((...((((.......((((........))))...((.....))))))....)).)))))....))))..))... ( -23.70)
>DroSim_CAF1 5009 93 + 1
AGUGCGUAUACCC-------------------CAUUGGAAGAGUCUGAAAACACCAAGAUAACCAUUGGAGGGCAGAAAGCGGACUCAGUCAGAUGGAUAUGGUAUGUGAAA
....(((((((((-------------------((((.((.((((((.......((((........))))...((.....))))))))..)).)))))....))))))))... ( -24.90)
>consensus
AGUGCGUAUACCC___________________CAUUGGAAGAGUCCGAAAACACCAAAAUAACCAUUGGAGGGCAGAAAGCGGACACAGUCAGAUGGAUAUGGUAUGUGAAA
....((((((((..............................((((.......((((........))))...((.....))))))...(((.....)))..))))))))... (-18.09 = -17.43 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:56 2006