Locus 3698

Sequence ID X_DroMel_CAF1
Location 9,859,877 – 9,859,979
Length 102
Max. P 0.738782
window6055

overview

Window 5

Location 9,859,877 – 9,859,979
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 95.91
Mean single sequence MFE -25.11
Consensus MFE -24.40
Energy contribution -24.02
Covariance contribution -0.37
Combinations/Pair 1.08
Mean z-score -1.58
Structure conservation index 0.97
SVM decision value 0.44
SVM RNA-class probability 0.738782
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9859877 102 - 22224390
UUUUUAUCUCUGCUUUAGCCUUUCCCGCCUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAACAUCAACACACCUGCAUGGAUGA
...((((((.(((....((((.....((((....))))..........(((..((((....))))..)))..))))(.....).........))).)))))) ( -27.10)
>DroSec_CAF1 4812 101 - 1
UUUUUAUCUCUGCUUUAGCCUUACCCGCCUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAACAU-AACACACCUGCAUGGAUGG
....(((((.(((............(((((..((((........))))(((..((((....))))..)))..))))).....-.........))).))))). ( -25.37)
>DroSim_CAF1 4521 101 - 1
UUUUUAUCUCUGCUUUAGCCUUUCCCGCCUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAACAU-AACACACCUGCAUGGAUGA
...((((((.(((............(((((..((((........))))(((..((((....))))..)))..))))).....-.........))).)))))) ( -25.87)
>DroYak_CAF1 4102 101 - 1
UUUUUAUUUCUGCUUUAGCCUUUCCCGCUUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAAUGUUAACACACCUGCAUGGAUG-
....((((..(((....((((..(((........)))...........(((..((((....))))..)))..))))...(((....)))...)))..))))- ( -22.10)
>consensus
UUUUUAUCUCUGCUUUAGCCUUUCCCGCCUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAACAU_AACACACCUGCAUGGAUGA
....(((((.(((....((((.....((((....))))..........(((..((((....))))..)))..))))(........)......))).))))). (-24.40 = -24.02 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:55 2006