Locus 3697

Sequence ID X_DroMel_CAF1
Location 9,859,517 – 9,859,636
Length 119
Max. P 0.660325
window6054

overview

Window 4

Location 9,859,517 – 9,859,636
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.69
Mean single sequence MFE -21.86
Consensus MFE -13.19
Energy contribution -15.32
Covariance contribution 2.13
Combinations/Pair 1.17
Mean z-score -1.77
Structure conservation index 0.60
SVM decision value 0.27
SVM RNA-class probability 0.660325
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9859517 119 - 22224390
GGUGUGGGUGGUGGUAAGAAGUACAAA-AAAUAUAUAUAAAGACUAUAAAGACUGCCAUGUGGGAAAAUAGUUUAUAAAGCUAUUUUCUGGAUUAAAAGAUUACAGAAAAUCUUUAAACA
.......((((..((....(((.....-..............)))......))..)))).(.(((((((((((.....))))))))))).)....(((((((......)))))))..... ( -22.21)
>DroSec_CAF1 4413 119 - 1
-GAGUGGGUGGUGGUAAGAAGUACAAAUAUAUAUAUAUAAAGACUAUAAAGACUGCCAUGUGGGAAAAUAGUUUAUAAAGCUAUUUUCUGGAUUAAAAGAUUACAGCAAAUCUUUAAACA
-......((((..((....(((....((((....))))....)))......))..)))).(.(((((((((((.....))))))))))).)....(((((((......)))))))..... ( -24.60)
>DroSim_CAF1 3714 119 - 1
-GAGUGGGUGGUGGUAAGAAGUACAAAUAUAUAUAUAUAAAGACUAUAAAGACUGCCAUGUGGGAAAAUAGUUUAUAAAGCUAUUUUCUGGAUUAAAAGAUUACAGCAAAUCUUUAAACA
-......((((..((....(((....((((....))))....)))......))..)))).(.(((((((((((.....))))))))))).)....(((((((......)))))))..... ( -24.60)
>DroEre_CAF1 4260 100 - 1
-------------GGGAAAAGUGCAUAUAUGUGUG-------ACUAUAAAGACUGCCAUGUGGGAAAAUAGUUCAUAAAGCUAUUUUCUGGAUUAAGGGAUUACAAAAAAUCUUUAAACA
-------------.((...(((((((....)))).-------.((....))))).))...(.(((((((((((.....))))))))))).)....(((((((......)))))))..... ( -17.50)
>DroYak_CAF1 3735 103 - 1
GGUGUGGGUGGUAGUAAAAAGUAGGUAUAUGUACAUA-----UAUACAAAGACUGCCAAGUGGGAAAAUAGU------------UUUCUGGAUUAAAAGAUUACAGCCAAUCUAUAAGCA
..((((((((((.((((..(((..(((((((....))-----)))))....))).(((...(..((.....)------------)..)))).........)))).))).))))))).... ( -20.40)
>consensus
_GAGUGGGUGGUGGUAAGAAGUACAAAUAUAUAUAUAUAAAGACUAUAAAGACUGCCAUGUGGGAAAAUAGUUUAUAAAGCUAUUUUCUGGAUUAAAAGAUUACAGCAAAUCUUUAAACA
.......((((((((.....(((.....................)))....)))))))).(.(((((((((((.....))))))))))).)....(((((((......)))))))..... (-13.19 = -15.32 +   2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:54 2006