Locus 3695

Sequence ID X_DroMel_CAF1
Location 9,854,001 – 9,854,092
Length 91
Max. P 0.999289
window6051

overview

Window 1

Location 9,854,001 – 9,854,092
Length 91
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 74.69
Mean single sequence MFE -11.27
Consensus MFE -11.20
Energy contribution -11.20
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.78
Structure conservation index 0.99
SVM decision value 3.49
SVM RNA-class probability 0.999289
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9854001 91 - 22224390
CCCUGACCUUCCCCU----CCCCCGCUAC--U-------UUUAUUUUAUUUUAUUUUUGU---------UUUUGGUUUUUCUGGACCGCACACAUGCCACGCAUGCGUUACAG
..(((..........----..........--.-------.....................---------....(((((....)))))..((.(((((...))))).))..))) ( -11.20)
>DroEre_CAF1 5779 94 - 1
CCCUGACCUUCCCCU----CCUCCACUUC--UUUUCAUAUUAUUUUUAG----UUUUUCU---------UUUUGGUUUUUCUGGACCGCACACAUGCCACGCAUGCGUUACAG
..(((..........----..........--..................----.......---------....(((((....)))))..((.(((((...))))).))..))) ( -11.20)
>DroYak_CAF1 2289 109 - 1
CCCUGACCUUCCACUUCCCCUUCCCCUUCCCCUUCUACAUUGUUUUUAU----UAUUACUUUUUGGAUUUUUUGGUUUUUCUGGACCGCACACAUGCCACGCAUGCGUUACAG
..(((............................((((.(..((..(...----.)..))..).))))......(((((....)))))..((.(((((...))))).))..))) ( -11.40)
>consensus
CCCUGACCUUCCCCU____CCUCCACUUC__UUU__A_AUUAUUUUUAU____UUUUUCU_________UUUUGGUUUUUCUGGACCGCACACAUGCCACGCAUGCGUUACAG
..(((....................................................................(((((....)))))..((.(((((...))))).))..))) (-11.20 = -11.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:51 2006