| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,843,301 – 9,843,400 |
| Length | 99 |
| Max. P | 0.586694 |
| Location | 9,843,301 – 9,843,400 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -22.39 |
| Consensus MFE | -11.61 |
| Energy contribution | -13.17 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9843301 99 - 22224390 CAGCACAAUCUAAUAAUAUAGCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUACU------UGACAACGACUUAAAAAAUAGGAAAUAAGAUUGUGCUG--- (((((((((((.......((((......(((((..(....)..))))).......))))..------.........((((.....)))).....)))))))))))--- ( -22.02) >DroPse_CAF1 12527 108 - 1 CAGCACAAUCUAAUAAUAUACCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCCCCGCUAACUUUUCUCUGGGAAACAGAAGAGGGCAGGAGCAGGAGCAGAGG ............................(((((..(....)..)))))..((((.((((.(((..((.((((((.(....)...)))))).)).))).)).)).)))) ( -23.30) >DroSec_CAF1 4887 99 - 1 CAGCACAAUCUAAUAAUAUAGCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUACU------UGACAACGACUAAAAAAAUAGGAAAUAAGAUUGUGCUG--- (((((((((((.......((((......(((((..(....)..))))).......))))..------.........(((......)))......)))))))))))--- ( -21.82) >DroSim_CAF1 5130 99 - 1 CAGCACAAUCUAAUAAUAUAGCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUACU------UGACAACGACUAAAAAAAUAGGAAAUAAGAUUGUGCUG--- (((((((((((.......((((......(((((..(....)..))))).......))))..------.........(((......)))......)))))))))))--- ( -21.82) >DroEre_CAF1 4923 98 - 1 CAGCACAAUCUAAUAAUAUAGCGUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUCCU------UGACAACGAAUAA-AAAAUAGAAAAUAAGAUUGUGCUG--- (((((((((((........((((.....(((((..(....)..)))))......))))..(------((....)))....-.............)))))))))))--- ( -21.10) >DroPer_CAF1 12668 106 - 1 CAGCACAAUCUAAUAAUAUACCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCCCCUCUAACUUUUCCCUGAGAAACAGAAGAGGACAGGGGCAGGAGCAG--G ..((........................(((((..(....)..)))))....(((((((((....((((((...........))))))...)))))).)))))..--. ( -24.30) >consensus CAGCACAAUCUAAUAAUAUAGCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUACU______UGACAACGACUAAAAAAAUAGGAAAUAAGAUUGUGCUG___ (((((((((((.................(((((..(....)..)))))....(((................................)))....)))))))))))... (-11.61 = -13.17 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:48 2006