Locus 3692

Sequence ID X_DroMel_CAF1
Location 9,840,564 – 9,840,656
Length 92
Max. P 0.515285
window6046

overview

Window 6

Location 9,840,564 – 9,840,656
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 86.03
Mean single sequence MFE -18.23
Consensus MFE -13.71
Energy contribution -13.90
Covariance contribution 0.19
Combinations/Pair 1.08
Mean z-score -1.40
Structure conservation index 0.75
SVM decision value -0.04
SVM RNA-class probability 0.515285
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9840564 92 + 22224390
UAGCUCUCAAGAAGAGAUGCGGCUGGAAAAAAUCGGUGAAAAUCGAAGAAAAAUGUGUAUAAAUAAGCGAAGCUGUGGACAAUUUUCUUUGC
..((((((.....)))).)).(((((......)))))......(((((((((.(((.((((............)))).))).))))))))). ( -20.40)
>DroSec_CAF1 2232 81 + 1
UAGCUCUCAAGAAGAGAUAGGGCUGGAAA-----------AAUCGGAGAAAAAUGUAUAUAAAUAAGCGAAGCUGUGGACAAUUUUCUUUGC
(((((((...........)))))))....-----------...(((((((((.(((...((....(((...))).)).))).))))))))). ( -15.80)
>DroSim_CAF1 2450 81 + 1
UAGCUCUCAAGAAGAGAUGGGGCUGGAAA-----------AAUCGGAGAAAAAUGUAUAUAAAUAAGCGAAGCUGUGGACAAUUUUCUUUGC
((((((.((........))))))))....-----------...(((((((((.(((...((....(((...))).)).))).))))))))). ( -16.60)
>DroEre_CAF1 2245 89 + 1
UAGCUCUCGAGAAGAGAUGGGUCUGAAAA--AUCGGCGAACAUCGCAGAGAAAUGUAUAUAAAUA-GCGAAGCUGUGGACAAUUUUCUUUGC
...............((((..(((((...--.)))).)..))))((((((((((((......(((-((...)))))..)))..))))))))) ( -20.10)
>consensus
UAGCUCUCAAGAAGAGAUGGGGCUGGAAA___________AAUCGGAGAAAAAUGUAUAUAAAUAAGCGAAGCUGUGGACAAUUUUCUUUGC
((((((((.....))))....))))..................(((((((((.(((.((((............)))).))).))))))))). (-13.71 = -13.90 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:47 2006