Locus 3690

Sequence ID X_DroMel_CAF1
Location 9,838,244 – 9,838,351
Length 107
Max. P 0.780989
window6041

overview

Window 1

Location 9,838,244 – 9,838,351
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 73.07
Mean single sequence MFE -29.17
Consensus MFE -20.23
Energy contribution -22.37
Covariance contribution 2.14
Combinations/Pair 1.10
Mean z-score -1.10
Structure conservation index 0.69
SVM decision value 0.56
SVM RNA-class probability 0.780989
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9838244 107 + 22224390
ACGCGCACGCGACAAAAACAGCAUGAGGCAGCCAAGUAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCAGCGCCGUACCGCUACCGC
..((((..((..........))(((((((((.(..((.....)).......((((((.(((.....))).))))))).)))))))))..)))).............. ( -38.70)
>DroVir_CAF1 1 82 + 1
----------------------AUGUGGCAGCCGAGCACACAGCACAUCCUGACGC---UGAUCCUCUGCAGCAGCCUUUGCCUAAUCAGCGCGAGUCCUCUUCCAC
----------------------..((((.....(((.((.(((......))).(((---((((.....((((......))))...)))))))...)).)))..)))) ( -19.20)
>DroSec_CAF1 1 85 + 1
----------------------AUGAGGCAGCCAAGUAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCAGCGCCGUACCGCUCCCGC
----------------------(((((((((.(..((.....)).......((((((.(((.....))).))))))).))))))))).((((......))))..... ( -32.80)
>DroSim_CAF1 179 107 + 1
ACACGCACGCAACAGAGACAGCAUGAGGCAGCCAAGUAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCAGCGCCGUACCGCUCCCGC
........((..........(.(((((((((.(..((.....)).......((((((.(((.....))).))))))).))))))))))((((......))))...)) ( -34.80)
>DroEre_CAF1 1 85 + 1
----------------------AUGAGCCAGCCAAGCAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCACCGCCGUACCGCUCCCGC
----------------------(((((.(((.(..((.....)).......((((((.(((.....))).))))))).))).)))))....((......))...... ( -24.90)
>DroMoj_CAF1 21 92 + 1
------------CAACAACAAAAUGUGGCAGCCGAGUACACAGCAUUUCCUGGCGC---UGAUCUUCUGCAGCGCCGUCUGCCUGCUUAGCGCAAGUCCUCUUCCAU
------------............(((((((.(..((.....)).......(((((---((........)))))))).))))).))...((....)).......... ( -24.60)
>consensus
______________________AUGAGGCAGCCAAGUAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCAGCGCCGUACCGCUCCCGC
......................(((((((((.(..((.....)).......((((((.(((.....))).))))))).))))))))).................... (-20.23 = -22.37 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:42 2006