| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,837,242 – 9,837,353 |
| Length | 111 |
| Max. P | 0.714913 |
| Location | 9,837,242 – 9,837,353 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 95.35 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -24.23 |
| Energy contribution | -24.10 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9837242 111 - 22224390 ACCUAAUGAGAGAAACUAAGUACAUAGUAAGGGAAACCGUAAAUUAGAAUCGCUGAUUGCCUUAUUAGACUUUGACACGAAUGUGAGAUGACAUUGCGAGCUCAAAGGUUA ..((((((((....((((......))))..((....))((((.((((.....)))))))))))))))).(((((((.(((((((......))))).)).).)))))).... ( -27.30) >DroSec_CAF1 15924 111 - 1 ACUUAAUGAGAGAAACUAAGUACAUAGUAAGGGAAACCGUAAAUUAGAAUCGCUGAUUGCCUUAUUAGACUUUGACAGGAAUGUGAGAUGACAUUGCGAGCUCAAAGGUUA ..((((((((....((((......))))..((....))((((.((((.....)))))))))))))))).(((((((.(.(((((......))))).)..).)))))).... ( -24.20) >DroEre_CAF1 13912 111 - 1 AUUUAAUGAGAGAAACUAAGUACAAAGUAAGGGGAACCGUAAAUUAGAAUCGCUGAUUGCCUUAUUAGACUUUGACACGAAUGUGAGAUGACAUUGCGGGCUCAAAGGUUA .(((((((((....................((....))((((.((((.....)))))))))))))))))((((((..(((((((......))))).))...)))))).... ( -24.00) >DroYak_CAF1 16392 111 - 1 AUUUAAUGAGUGAAACUAAGUACUUUGUAAGGGAAACCGCAAAUUAGAAUCGCUGAUUGCCUUAUUAGACUUUGACACGAAUGUGAGAUGACAUUGCGAGCUCAAAGGUUA .(((((((((....................((....))((((.((((.....)))))))))))))))))(((((((.(((((((......))))).)).).)))))).... ( -26.90) >consensus ACUUAAUGAGAGAAACUAAGUACAUAGUAAGGGAAACCGUAAAUUAGAAUCGCUGAUUGCCUUAUUAGACUUUGACACGAAUGUGAGAUGACAUUGCGAGCUCAAAGGUUA ..((((((((....................((....))((((.((((.....)))))))))))))))).(((((((.(((((((......))))).)).).)))))).... (-24.23 = -24.10 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:41 2006