| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,836,388 – 9,836,486 |
| Length | 98 |
| Max. P | 0.556954 |
| Location | 9,836,388 – 9,836,486 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 80.53 |
| Mean single sequence MFE | -29.95 |
| Consensus MFE | -14.71 |
| Energy contribution | -17.05 |
| Covariance contribution | 2.34 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9836388 98 + 22224390 GAAGGAGAGCUUGAAAGUAAA-AGCAACAGGCCCAAAGAUGACAUAACAUCUGGUGGAGCUCUGUUGUUGCCGGUUUUCACUCUUUCUCUUUUG--CUUUU----- ((..(((((..(((((((...-(((((((((((((.(((((......)))))..))).)).))))))))....))))))))))))..)).....--.....----- ( -33.90) >DroSec_CAF1 15145 98 + 1 GAAGGAGAGCUUGAAAGUAAA-AGCAACAGGCCCAAAGAUGACAUAACAUCUGGUGGAGCUCUGUUGUUGCCGGUUUUCGCUCUUUCUCUUUUG--CUUUU----- ((..((((((..((((((...-(((((((((((((.(((((......)))))..))).)).))))))))....))))))))))))..)).....--.....----- ( -35.70) >DroSim_CAF1 13746 98 + 1 GAAGGAGAGCUUGAAAGUAAA-AGCAACUGGCCCAAAGAUGACAUAACAUCUGGUGGAGCUCUGUUGUUGCCGGUUUUCGCUCUUUCUCUUUUG--CUUUU----- ((..((((((..((((((...-((((((.((((((.(((((......)))))..))).)))..))))))....))))))))))))..)).....--.....----- ( -32.00) >DroEre_CAF1 13176 95 + 1 ---GGAGAGCUUGAAAGUAAA-AGCAACAGCCCCAAAGAUGACAUAACAUCUGGUGGAGCUCAGUUGUUGCCGGUUUUCGCUCUUUCUCUUUUG--CUUUU----- ---(((((((..((((((...-(((((((((.(((.(((((......)))))..))).)))..))))))....)))))))))))))........--.....----- ( -27.30) >DroWil_CAF1 32050 98 + 1 GUGUGUGAGCA-AAGAGUAUAGACGAACCGGCAGACCGAUGACAUAAUCUUUUAUGGUGAACUUUUGC-------UUUUACUUUUUGUGUUGUUCGAUUUUUGAGC ........(((-(((((((.((.((((.(((....)))....(((((....))))).......)))))-------)..))))))))))...((((((...)))))) ( -19.90) >DroYak_CAF1 15614 98 + 1 GAUGGAGAGCUUGAAAGUAAA-AGCAACAGCCGCAAAGAUGACAUAACAUCUGGUGGAGGUCUGUUGUUGCCGGUUUGCGCUCUUUCUCUUUUG--CUUUU----- ((..((((((.((((......-((((((((((.((.(((((......)))))..))..)).)))))))).....)))).))))))..)).....--.....----- ( -30.90) >consensus GAAGGAGAGCUUGAAAGUAAA_AGCAACAGGCCCAAAGAUGACAUAACAUCUGGUGGAGCUCUGUUGUUGCCGGUUUUCGCUCUUUCUCUUUUG__CUUUU_____ ((..((((((..(((((.....((((((.((((((.(((((......)))))..))).)).).)))))).....)))))))))))..))................. (-14.71 = -17.05 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:39 2006