Locus 3686

Sequence ID X_DroMel_CAF1
Location 9,835,978 – 9,836,068
Length 90
Max. P 0.696717
window6037

overview

Window 7

Location 9,835,978 – 9,836,068
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 95.81
Mean single sequence MFE -21.90
Consensus MFE -19.30
Energy contribution -19.50
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.32
Structure conservation index 0.88
SVM decision value 0.34
SVM RNA-class probability 0.696717
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9835978 90 - 22224390
GCCCCC-AAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAUAUGAGGGAUUUCGAAAUAUAAUUUAAGCCAAGUGACUGG
....((-(...(((......(.....)..(((((((((...((((((((............))))))))...)))))))))..)))..))) ( -22.40)
>DroSec_CAF1 14736 91 - 1
GCCCCCUAAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAUCUGAGGGAUUUUGAAAUAUAAUUUAAGCCAAAUGACUGG
................(((((.....)..(((((((((...((((((((.(((.....)))))))))))...)))))))))....).))). ( -21.20)
>DroSim_CAF1 13361 91 - 1
GCCCCCUAAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAUCUGAGGGAUUUUGAAAUAUAAUUUAAGCCAAAUGACUGG
................(((((.....)..(((((((((...((((((((.(((.....)))))))))))...)))))))))....).))). ( -21.20)
>DroEre_CAF1 12781 90 - 1
GCCCCC-AAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUACGGAUAUCUGAGGGAUUUCGAAAUAUAAUUUAAGCCAAGUGAUUGG
......-...............((((((.(((((((((...(((.((((.(((.....))))))).)))...)))))))))...)))))). ( -21.50)
>DroYak_CAF1 15201 90 - 1
GCCCCC-AAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAACUGAGGGAUUUCGAAAUGUAAUUUAAGCCAAGUGACUGG
....((-(...(((......(.....)..(((((((((.(.((((((((...(....)...)))))))).).)))))))))..)))..))) ( -23.20)
>consensus
GCCCCC_AAAACACAACAGCGAUAAUCAAGGCUUGAGUGGGAUUUCGGAUAUCUGAGGGAUUUCGAAAUAUAAUUUAAGCCAAGUGACUGG
................(((((.....)..(((((((((...((((((((.(((.....)))))))))))...)))))))))....).))). (-19.30 = -19.50 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:38 2006