Locus 3685

Sequence ID X_DroMel_CAF1
Location 9,835,454 – 9,835,574
Length 120
Max. P 0.819969
window6036

overview

Window 6

Location 9,835,454 – 9,835,574
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -24.84
Consensus MFE -24.24
Energy contribution -23.92
Covariance contribution -0.32
Combinations/Pair 1.07
Mean z-score -1.32
Structure conservation index 0.98
SVM decision value 0.68
SVM RNA-class probability 0.819969
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9835454 120 - 22224390
CCGCCAAAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAAUUUGGAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA
............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). ( -24.50)
>DroSec_CAF1 14189 120 - 1
CCGCCAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA
............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). ( -25.00)
>DroSim_CAF1 12813 120 - 1
CCGCCAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA
............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). ( -25.00)
>DroEre_CAF1 12247 120 - 1
CCGCCAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGUAUUAAUUGGGCA
............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))........(((..((.((....)).))..))).......)))). ( -24.70)
>DroYak_CAF1 14662 120 - 1
CCGCUAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA
............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). ( -25.00)
>consensus
CCGCCAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA
............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). (-24.24 = -23.92 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:37 2006