Locus 3682

Sequence ID X_DroMel_CAF1
Location 9,832,101 – 9,832,220
Length 119
Max. P 0.548426
window6032

overview

Window 2

Location 9,832,101 – 9,832,220
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.78
Mean single sequence MFE -38.76
Consensus MFE -28.44
Energy contribution -28.80
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -1.62
Structure conservation index 0.73
SVM decision value 0.03
SVM RNA-class probability 0.548426
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9832101 119 + 22224390
CCUUAAGUAGUUAAGAACUUCUGGCUUAGUCUCGUGCUGAGCAGUUGCCC-CUUUUGGUGUUCGGGUUCAAAUAGAACAUCUUAUGCAAAUUGCGAACGCCCAUAUGGGCGUGGCAAAGU
.(((((....))))).((((...(((((((.....))))))).((..(((-(....(((((((..((((.....)))).......((.....))))))))).....))).)..)).)))) ( -36.70)
>DroSec_CAF1 10935 119 + 1
CCUUAAGUAGUUAAGAACUUCUGGCUUUGUCUCGUGCUGAGCAGUUGAAC-CUUUUGGUGUUCGGGUUCAAAUAGAAGAUCUUAUGCAAAUUGCGAACGCCCAUAUGGGCGUGGCAACGU
......(((..(((((.((((((((((.((.....)).))))..((((((-((..........)))))))).)))))).))))))))...((((..((((((....)))))).))))... ( -39.90)
>DroSim_CAF1 9860 119 + 1
CCUUAAGUAGUUAAGAAUUUCUGGCUUUGUCUCGUGCUGAGCAGUUGAAC-CUUUUGGUGUUCGGGUUCAAAUAGAAGAUCUUAUGCAAAUUGCGAACGCCCAUAUGGGCGUGGCAUCGU
......(((..(((((.((((((((((.((.....)).))))..((((((-((..........)))))))).)))))).))))))))....(((..((((((....)))))).))).... ( -36.90)
>DroEre_CAF1 8972 120 + 1
CUCGAAGCAGUUAAGAACUUCUAGCUUUGUCUCCGGCUGAGCAGCUGACCCCAUUUGGUGUUCGGGUUCAGAUAGAAGAUCGUAUGCAAAUUGCGAACGCCCACAUGGGCGUGGCACCGC
......(((.....((.((((((((((.((.....)).))))..((((.(((...........))).)))).)))))).))...)))....(((..((((((....)))))).))).... ( -41.10)
>DroYak_CAF1 11131 119 + 1
CUUUGAGUACUUAAGAACCUGUAGCUUUGUCUUGGGCUGAGCAGUUGCCC-CCUUUGGUGUUCGGGUUCAAAUAGAAGAUCGUAUGCAAAUUGCGUACGCCCACAUGGGCGUGGCAGCAU
.((((.((((....(((((((..(((.......((((.........))))-.....)))...))))))).....(.....))))).))))((((.(((((((....)))))))))))... ( -39.20)
>consensus
CCUUAAGUAGUUAAGAACUUCUGGCUUUGUCUCGUGCUGAGCAGUUGACC_CUUUUGGUGUUCGGGUUCAAAUAGAAGAUCUUAUGCAAAUUGCGAACGCCCAUAUGGGCGUGGCAACGU
......(((..(((((.((((((..((((.......(((((((.(...........).)))))))...)))))))))).))))))))....(((..((((((....)))))).))).... (-28.44 = -28.80 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:33 2006