Locus 3680

Sequence ID X_DroMel_CAF1
Location 9,827,706 – 9,827,808
Length 102
Max. P 0.995927
window6029

overview

Window 9

Location 9,827,706 – 9,827,808
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 96.07
Mean single sequence MFE -23.22
Consensus MFE -20.96
Energy contribution -21.36
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.90
SVM decision value 2.63
SVM RNA-class probability 0.995927
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9827706 102 - 22224390
UUUGAAGGCUAAAUGCAAGAUUUGAUCGGAAUUUAAACAGUUUUAACAUGUUUGGCUUAUGUUAUAU-UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA
....(((((...((((.......(((((.....((((((.((((((((((.......)))))))...-..))).)))))).....)))))...))))))))). ( -19.20)
>DroSec_CAF1 4089 101 - 1
UUUGAAGGCUAAAUGCAAGAU-UGAUCGGAAUUUAAACACUUUUAACAUGUUUGGCUUAUGUUAUAU-UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA
....(((((...((((.....-.(((((.....(((((((((((((((((.......)))))))...-..)))))))))).....)))))...))))))))). ( -23.70)
>DroSim_CAF1 5338 101 - 1
UUUGAAGGCUAAAUGCAAGAU-UGAUCGGAAUUUAAACACUUUUAACAUGUUUGGCUUAUGUUAUAU-UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA
....(((((...((((.....-.(((((.....(((((((((((((((((.......)))))))...-..)))))))))).....)))))...))))))))). ( -23.70)
>DroEre_CAF1 4141 102 - 1
UUUGAAGGCUAAAUGCAAGAU-UGAUCGAAAUUUAAACACUUUUAACAUGGCUUGGCUAUGUUAUAUUUUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA
....(((((...((((.....-.(((((.....(((((((((((((((((((...)))))))))......)))))))))).....)))))...))))))))). ( -26.80)
>DroYak_CAF1 7171 101 - 1
UUUGAAGGCUAAAUGCAAGAU-UGAUCGGAAUUUAAACACUUUUAACAUGUUUGGCUUAUGUUUUAU-UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA
....(((((...((((.....-.(((((.....((((((((((.((((((.......))))))....-..)))))))))).....)))))...))))))))). ( -22.70)
>consensus
UUUGAAGGCUAAAUGCAAGAU_UGAUCGGAAUUUAAACACUUUUAACAUGUUUGGCUUAUGUUAUAU_UUGAAGUGUUUAUAGCACGAUUUUGGCAUGUUUUA
....(((((...((((.......(((((.....(((((((((((((((((.......)))))))......)))))))))).....)))))...))))))))). (-20.96 = -21.36 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:30 2006