Locus 3678

Sequence ID X_DroMel_CAF1
Location 9,826,685 – 9,826,778
Length 93
Max. P 0.660683
window6027

overview

Window 7

Location 9,826,685 – 9,826,778
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 87.63
Mean single sequence MFE -25.72
Consensus MFE -15.96
Energy contribution -19.78
Covariance contribution 3.81
Combinations/Pair 1.05
Mean z-score -2.65
Structure conservation index 0.62
SVM decision value 0.27
SVM RNA-class probability 0.660683
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9826685 93 + 22224390
AUUACGUGAAGGGGCUGCCCCGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAAGCCAAAGCCAAAGCUAAAGCCAGGUAGUCCAAGUCCAA
.....(.((..((((((((.((....))...((((.......((((........))))..(((....)))...))))))))))))...))).. ( -27.90)
>DroSec_CAF1 3107 93 + 1
AUUACGUGAAGGGGCUGCCCCGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAAGCCAAAGCUGAAGCUAAAGCCAGGUAGUCCAAGUCCAA
.....(.((..((((((((.((....))...((((.......((((........))))..(((....)))...))))))))))))...))).. ( -28.60)
>DroSim_CAF1 4366 93 + 1
AUUACGUGAAGGGGCUGCCCCGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAAGCCAAAGCUGAAGCUAAAGCCAGGUAGUCCAAGUCCAA
.....(.((..((((((((.((....))...((((.......((((........))))..(((....)))...))))))))))))...))).. ( -28.60)
>DroYak_CAF1 6109 77 + 1
AGUA----------------CGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAGCCAAAAGCAAAAGCUAAAGCCAGGUAGUCCAAGUCCAA
..((----------------((....)))).((((.....(((.(((....))).)))..(((....)))...))))((....))........ ( -17.80)
>consensus
AUUACGUGAAGGGGCUGCCCCGUGAACGUAAUGGCAAACAUGGGUUAAAGUUAAAGCCAAAGCUAAAGCUAAAGCCAGGUAGUCCAAGUCCAA
...........((((((((.((....))...((((.......((((........))))..(((....)))...))))))))))))........ (-15.96 = -19.78 +   3.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:28 2006