Locus 3672

Sequence ID X_DroMel_CAF1
Location 9,818,269 – 9,818,372
Length 103
Max. P 0.971778
window6019

overview

Window 9

Location 9,818,269 – 9,818,372
Length 103
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 84.26
Mean single sequence MFE -26.91
Consensus MFE -16.60
Energy contribution -17.72
Covariance contribution 1.12
Combinations/Pair 1.07
Mean z-score -3.30
Structure conservation index 0.62
SVM decision value 1.68
SVM RNA-class probability 0.971778
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9818269 103 - 22224390
U---ACAUUUUUUAUUUGUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGUCCCCUCGCUCG-------UCUG-UCGUCACAUGAAAUGAUAAAUAAAAAUAAAAC
.---....(((((((((((((((((((((((((.(((((.......))).......((...))..)).))-------))))-).......))))))))))))))))))...... ( -29.51)
>DroSec_CAF1 19746 103 - 1
U---ACAUUUUUUAUUUGUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGGCCCCUCGCUCG-------UCUG-UCGUCACAUGAAAUGAGAAAUAAAAUUAAAAC
.---.....((((((((.(((((((((((((((.(((((.......))).......(((...))))).))-------))))-).......)))))))).))))))))....... ( -27.41)
>DroSim_CAF1 9737 103 - 1
U---ACAUUUUUUAUUUUUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGGCCCCUCGCUCG-------UCUG-UCGUCACAUGAAAUGAGAAAUAAAAUUAAAAC
.---.....((((((((((((((((((((((((.(((((.......))).......(((...))))).))-------))))-).......)))))))))))))))))....... ( -28.91)
>DroEre_CAF1 11061 108 - 1
U---ACAUUUUUUAUUUGUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGGCCCCUCGCU--CUGGCGCUCUG-UCGUCACAUGAAAUGAGAAAUAAAACUAAAAC
.---.....((((((((.(((((((((((((.(((((((.......))).......((((.....)))--)..))))))))-).......)))))))).))))))))....... ( -32.21)
>DroAna_CAF1 9550 107 - 1
UUAAAAGUUUUUUAUUUGCUAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUAUGGAGCCCUCUGUCC-------GCAAUACGUUGCAUAAAAACCAAAAUUAAACCGAAAA
...........................(((.((....))(((((((((.(((.((((.(((....((...-------.))....))).)))).))).))))))))).))).... ( -16.50)
>consensus
U___ACAUUUUUUAUUUGUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGGCCCCUCGCUCG_______UCUG_UCGUCACAUGAAAUGAGAAAUAAAACUAAAAC
.........((((((((.((((((((...((((...(((.......))).......((((.....))))..............))))...)))))))).))))))))....... (-16.60 = -17.72 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:21 2006