Locus 3669

Sequence ID X_DroMel_CAF1
Location 9,814,575 – 9,814,684
Length 109
Max. P 0.960734
window6012

overview

Window 2

Location 9,814,575 – 9,814,684
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 93.14
Mean single sequence MFE -22.36
Consensus MFE -19.60
Energy contribution -19.84
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.67
Structure conservation index 0.88
SVM decision value 1.52
SVM RNA-class probability 0.960734
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9814575 109 + 22224390
UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGACUAACAACAAGUUUAACUACUACUUGAAUGGAAAAGUGGAAAACUGUGAGGCAGG
....((.....(((.((((((......))))))......((((((((....(......).....)))))))).((((((........))))))....)))....))... ( -24.40)
>DroSec_CAF1 9889 103 + 1
UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGACUUACAACAAGUUUAACUACAACUUGAAUGGAAAAGUGGAAAACUGUGA------
....((....((...((((((((.....(((.....)))((((((((....(......).....))))))))))))).)))...))..(((.....)))))..------ ( -19.10)
>DroSim_CAF1 5680 103 + 1
UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGACUUACAACAAGUUUAACUACUACUUGAAUGGAAAAGUGGAAAACUGUGA------
...........(((.((((((......))))))......((((((((....(......).....)))))))).((((((........))))))....)))...------ ( -20.90)
>DroEre_CAF1 5807 108 + 1
UGGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGAUUUACAACAAGUUUAACUACUACUUGAACGGAAAAGUGGAAAACUGUGU-GCAGA
....(((....(((.((((((......))))))......((((((((....(......).....)))))))).((((((........))))))....)))..)-))... ( -25.70)
>DroYak_CAF1 7636 108 + 1
UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACGAGCAGUUGAACGAAGGGAUUUACAACAAGUUUAACUACUACUCGAAUGGAAAAGUGGAAAACUGUGA-GCAGA
....((.....(((.((((((......)))))).((((.((((((((....(......).....))))))))....)))).................)))...-))... ( -21.70)
>consensus
UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGACUUACAACAAGUUUAACUACUACUUGAAUGGAAAAGUGGAAAACUGUGA_GCAG_
...........(((.((((((......))))))......((((((((....(......).....)))))))).((((((........))))))....)))......... (-19.60 = -19.84 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:14 2006