Locus 3668

Sequence ID X_DroMel_CAF1
Location 9,814,342 – 9,814,437
Length 95
Max. P 0.608509
window6011

overview

Window 1

Location 9,814,342 – 9,814,437
Length 95
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 87.47
Mean single sequence MFE -22.63
Consensus MFE -16.01
Energy contribution -16.69
Covariance contribution 0.68
Combinations/Pair 1.10
Mean z-score -1.81
Structure conservation index 0.71
SVM decision value 0.15
SVM RNA-class probability 0.608509
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9814342 95 - 22224390
AAAAAGACAGACAAAAAUAUGGUCCAUGUGGGCUGCUUCAAGCGAUUUUCUGUCGGGCAGUCUUAAAA------------AACCUUUCAAGAGGGAGAAUGGCAGAA
.....((((((.........(((((....)))))((.....)).....))))))..((..((((....------------..((((....))))))))...)).... ( -22.80)
>DroSec_CAF1 9656 95 - 1
AAAAAGACAGACAAAAAUAUGAUCCAUGUGGGCUGCUCCAAGCGAUUUUCUGUCGGGCAAUCUCAAAA------------AAACUUUCAAGAGGGAGAAUGGCAGAA
.....((((((............((....))(((......))).....)))))).(.((.((((....------------...(((....))).)))).)).).... ( -19.20)
>DroSim_CAF1 5447 95 - 1
AAAAAGACAGACAAAAAUAUGGUCCAUGUGGGCUGCUCCAAGCGAUUUUCUGUCGGGCAAUCUCAAAA------------AAACUUUCAAGAGGGAGAAUGGCAGAA
.....((((((.........(((((....)))))((.....)).....)))))).(.((.((((....------------...(((....))).)))).)).).... ( -22.30)
>DroEre_CAF1 5575 94 - 1
AAAAUGACAGAAAAAAAUGUGCUCCAUGUGGGCAGCUCGAAGCGAUUUUCUGUCGGGCAGUCUCAAA-------------AAACGUUCAAGAGGGAGAAUGGCAGAA
....((((((((((.....(((.((....)))))((.....))..)))))))))).((..((((...-------------..............))))...)).... ( -23.83)
>DroYak_CAF1 7392 106 - 1
AAAAAGACGCAAAAAAAUAUGGUCCAUGUGGGCUGCUC-AAGCGAUUUGCUGUCGGCCAGUCUCAAAAAAAAAAAAUAAAAAACAUUCAAGAGGGAGAAUGGCAGAA
.....((((((((.......(((((....)))))((..-..))..))))).))).((((.((((..............................)))).)))).... ( -25.01)
>consensus
AAAAAGACAGACAAAAAUAUGGUCCAUGUGGGCUGCUCCAAGCGAUUUUCUGUCGGGCAGUCUCAAAA____________AAACUUUCAAGAGGGAGAAUGGCAGAA
.....((((((.........(((((....)))))((.....)).....)))))).(.((.((((..............................)))).)).).... (-16.01 = -16.69 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:13 2006